Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 2.3e-99 365.5 183 100.0
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.8e-97 358.6 183 97.8
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 8.5e-94 347.1 183 93.4
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 8.5e-94 347.1 183 93.4
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.5e-93 346.3 183 94.0
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.2e-93 345.1 183 92.9
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 7.2e-93 344.0 183 92.3
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.2e-92 343.2 181 92.3
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.7e-92 342.0 183 92.9
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 3.6e-92 341.7 183 93.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.0e-91 340.1 183 91.3
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.0e-91 340.1 183 91.3
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.4e-91 339.7 183 90.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.8e-91 339.3 182 91.8
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.8e-91 339.3 183 91.8
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 91.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 5.2e-91 337.8 183 91.3
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 90.7
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 90.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 89.6
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.4e-90 335.1 183 89.1
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.7e-90 334.3 183 89.6
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.7e-90 334.3 183 89.6
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 88.5
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 89.6
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 89.1
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 88.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 8.3e-89 330.5 182 86.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 87.4
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.4e-88 329.7 181 89.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 86.3
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 90.2
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 87.4
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.1e-88 328.6 190 86.3
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 89.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 88.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 86.9
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 86.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 88.5
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 88.0
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.9
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.9
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.9
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.6e-87 326.2 182 85.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 86.9
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 86.9
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 85.2
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 86.9
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.5e-87 324.7 183 85.8
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 85.8
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 3.8e-86 321.6 182 83.5
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 85.8
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 85.8
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.7
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.1
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 84.2
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 85.2
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 85.2
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 84.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 84.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.2e-84 316.6 181 85.6
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.6e-84 316.2 181 85.6
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 82.5
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 83.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.8e-83 312.8 179 84.9
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 83.6
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 2.3e-83 312.4 181 82.9
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.5
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 81.4
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 83.1
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 4.0e-83 311.6 182 83.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.5
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 179 84.9
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 6.8e-83 310.8 228 71.5
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.5
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.2e-82 310.1 179 84.4
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 83.4
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 83.4
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 83.4
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 82.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 83.4
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 83.4
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 83.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 3.4e-82 308.5 181 82.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 81.4
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 81.8
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 81.4
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 81.8
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.7e-81 306.2 181 81.8
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.8e-81 305.4 184 80.4
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.7e-81 305.1 179 83.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.7e-81 305.1 179 82.7
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 4.9e-81 304.7 179 82.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 8.3e-81 303.9 184 80.4
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 8.3e-81 303.9 182 83.5
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 82.0
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 80.9
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.4e-80 303.1 179 83.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 81.4
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 7.0e-80 300.8 184 79.9
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 3.8e-78 295.0 183 79.8
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 8.6e-78 293.9 184 78.8
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.9e-77 292.7 183 79.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 3.3e-77 292.0 184 76.6
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.6e-76 289.7 183 74.3
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.0e-75 287.0 219 68.5
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 4.0e-75 285.0 183 75.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.4e-74 282.0 182 75.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.4e-73 277.7 155 87.7
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 8.3e-73 277.3 185 73.5
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 8.3e-73 277.3 152 88.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-72 276.9 184 70.1
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.4e-72 276.6 155 85.2
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.8e-72 276.2 183 70.5
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.1e-72 275.0 183 77.6
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 9.2e-72 273.9 183 70.5
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 76.0
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.2e-68 263.5 181 74.6
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.8e-67 259.6 152 83.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 7.5e-66 254.2 181 66.3
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 5.4e-64 248.1 188 70.7
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.6e-63 246.5 181 69.1
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 3.0e-62 242.3 136 85.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.4e-58 228.8 183 67.8
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.7e-57 226.5 183 63.9
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 4.9e-57 224.9 138 77.5
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.6e-55 219.9 179 67.6
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.6e-55 219.9 155 72.3
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.3e-53 212.2 175 62.9
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 4.0e-51 205.3 158 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 6.8e-51 204.5 152 65.1
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 8.4e-49 197.6 102 95.1
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.2e-48 195.7 149 65.8
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 6.0e-47 191.4 123 76.4
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.5e-45 186.8 100 89.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 9.6e-45 184.1 100 90.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.6e-44 183.3 186 48.9
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.6e-44 183.3 99 88.9
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 2.8e-44 182.6 158 60.1
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.8e-43 179.9 132 66.7
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 4.9e-41 171.8 106 78.3
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.0e-38 164.1 134 63.4
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 2.1e-36 156.4 81 92.6
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.0e-35 151.0 105 68.6
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 6.4e-33 144.8 99 69.7
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.0e-31 138.3 81 80.2
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.0e-30 137.5 78 85.9
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 6.9e-27 124.8 106 61.3
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.5e-26 123.6 101 61.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.1e-20 103.2 106 56.6
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-19 100.9 68 63.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-18 97.4 52 92.3
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 4.9e-17 92.0 127 48.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.9e-08 63.5 121 38.0
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.2e-08 62.4 81 45.7
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.8e-06 57.0 37 67.6
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 2.3e-06 56.6 95 35.8
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 5.1e-06 55.5 140 24.3


User provided reference genes

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