Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.2e-192 676.4 343 100.0
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.1e-91 340.9 184 93.5
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 9.7e-91 337.8 212 80.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 9.7e-91 337.8 212 80.2
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.8e-90 335.5 184 89.1
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 4.8e-90 335.5 262 67.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 8.2e-90 334.7 184 91.3
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.1e-89 332.8 184 88.0
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.5e-88 330.5 184 88.0
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.0e-88 330.1 182 89.6
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 7.7e-88 328.2 184 87.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.7e-87 327.0 184 87.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.7e-87 327.0 180 88.9
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 5.0e-87 325.5 184 86.4
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.0e-87 325.5 184 87.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 6.5e-87 325.1 184 87.0
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 6.5e-87 325.1 184 85.9
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.5e-86 323.2 184 86.4
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 2.5e-86 323.2 192 82.3
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 5.5e-86 322.0 184 87.0
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 9.4e-86 321.2 184 85.3
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 2.7e-85 319.7 178 88.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.7e-85 319.7 184 85.9
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.7e-85 318.9 184 85.3
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.1e-85 318.5 184 85.3
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.4e-84 317.4 181 85.1
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.8e-84 317.0 184 84.8
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.8e-84 317.0 187 82.4
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.3e-84 316.6 182 84.6
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.0e-84 316.2 184 82.1
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.0e-84 316.2 185 83.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 6.7e-84 315.1 184 84.2
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 8.8e-84 314.7 184 83.7
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-83 314.3 184 84.8
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-83 313.5 184 82.6
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-83 313.5 184 82.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.6e-83 313.2 187 83.4
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.6e-83 313.2 182 83.5
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.6e-83 313.2 182 84.1
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 3.3e-83 312.8 181 84.0
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 4.4e-83 312.4 184 80.4
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 7.4e-83 311.6 182 84.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 7.4e-83 311.6 182 83.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 9.7e-83 311.2 184 82.6
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 9.7e-83 311.2 182 83.0
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.3e-82 310.8 182 83.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.2e-82 310.1 184 82.1
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.2e-82 310.1 184 82.1
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.8e-82 309.7 184 81.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.8e-82 309.7 184 81.5
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.7e-82 309.3 182 82.4
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.8e-82 308.9 184 79.3
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.8e-82 308.9 184 79.3
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.4e-81 307.4 182 82.4
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.8e-81 307.0 177 85.9
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.8e-81 307.0 177 85.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.8e-81 307.0 184 79.9
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.8e-81 307.0 183 80.9
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 4.1e-81 305.8 184 80.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.3e-81 305.4 184 79.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 7.0e-81 305.1 184 79.3
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 7.0e-81 305.1 184 80.4
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.2e-80 304.3 184 79.9
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.6e-80 303.9 184 81.0
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.6e-80 303.9 184 82.1
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.6e-80 303.9 177 80.8
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-80 303.5 184 80.4
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.6e-80 303.1 184 79.9
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.8e-79 299.3 181 78.5
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.8e-79 299.3 185 81.1
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 5.0e-79 298.9 184 76.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.0e-79 298.9 182 77.5
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.0e-79 298.9 182 77.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.0e-79 298.9 182 80.8
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.5e-79 298.5 182 77.5
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.1e-78 297.7 184 77.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.5e-78 297.4 178 80.9
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.5e-78 297.4 178 79.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.9e-78 297.0 184 77.7
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.2e-78 296.2 184 78.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.5e-78 295.4 182 79.7
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 7.2e-78 295.0 184 78.3
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 9.4e-78 294.7 178 81.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.6e-77 292.7 177 79.1
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 4.7e-77 292.4 180 75.6
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 8.0e-77 291.6 178 80.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 4.0e-76 289.3 184 73.4
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 5.2e-76 288.9 184 77.2
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 6.8e-76 288.5 184 76.6
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.4e-75 286.2 177 78.5
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 7.5e-75 285.0 182 73.1
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 9.7e-75 284.6 184 74.5
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.7e-74 283.9 184 73.9
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 3.7e-74 282.7 182 74.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 3.7e-74 282.7 182 74.2
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.8e-74 282.3 183 76.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 6.3e-74 282.0 182 74.2
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 6.3e-74 282.0 182 74.2
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 6.3e-74 282.0 182 74.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.4e-73 280.8 184 74.5
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.4e-73 280.8 185 75.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.8e-73 280.4 184 73.9
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.1e-73 279.6 178 74.7
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 4.1e-73 279.3 193 73.1
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 4.1e-73 279.3 184 73.4
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 4.1e-73 279.3 185 74.6
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 4.1e-73 279.3 185 72.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.0e-72 276.9 184 73.9
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.0e-72 276.9 179 74.3
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 2.7e-72 276.6 189 73.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.5e-72 276.2 185 71.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 5.9e-72 275.4 187 71.7
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.0e-71 274.6 170 78.8
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.3e-71 274.2 185 71.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.2e-71 273.5 177 71.2
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.8e-71 272.7 179 72.6
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.0e-71 272.3 184 72.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 5.0e-71 272.3 182 70.9
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 5.0e-71 272.3 182 73.1
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.1e-70 271.2 185 74.6
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.2e-70 269.6 185 69.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 6.1e-69 265.4 182 70.9
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 8.0e-69 265.0 180 72.2
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 8.0e-69 265.0 177 75.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 6.3e-66 255.4 181 68.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 8.3e-66 255.0 178 70.2
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 4.1e-65 252.7 178 69.1
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 3.3e-62 243.0 186 62.9
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 6.1e-61 238.8 186 67.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 4.9e-58 229.2 184 60.9
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.8e-57 227.3 180 64.4
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 7.0e-57 225.3 165 71.5
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 2.3e-55 220.3 182 63.2
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.9e-49 200.7 184 57.1
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.0e-47 194.9 118 75.4
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.3e-46 189.5 115 79.1
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.2e-43 181.4 197 51.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.7e-42 176.4 177 51.4
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.2e-37 161.4 179 41.3
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 4.7e-29 132.9 109 66.1
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.7e-26 124.4 99 64.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.7e-26 124.4 76 78.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.7e-15 87.8 57 77.2
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 6.9e-12 75.9 59 62.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.2e-11 75.1 55 65.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.8e-10 70.1 41 80.5
Cfa011608 Carpinus fangiana HOM05D025629 ORTHO05D017484 5.1e-07 59.7 45 66.7


User provided reference genes

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