Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 4.7e-88 327.8 162 100.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 4.6e-67 258.1 152 82.2
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 4.6e-67 258.1 152 82.2
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.8e-66 256.1 150 78.7
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.8e-63 246.1 154 76.6
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 3.1e-63 245.4 156 74.4
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 9.0e-63 243.8 151 76.8
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 2.9e-61 238.8 156 72.4
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 6.5e-61 237.7 150 74.7
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 3.2e-60 235.3 150 76.7
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 3.5e-59 231.9 151 76.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 6.0e-59 231.1 163 66.9
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 6.0e-59 231.1 152 73.0
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 7.9e-59 230.7 160 70.6
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 2.3e-58 229.2 152 74.3
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 3.9e-58 228.4 153 71.9
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 6.7e-58 227.6 161 68.3
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.1e-57 226.9 147 72.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.5e-57 226.5 155 70.3
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 1.5e-57 226.5 162 67.9
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 2.5e-57 225.7 151 73.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.7e-57 224.6 148 73.0
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 9.6e-57 223.8 152 68.4
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 2.8e-56 222.2 151 69.5
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 2.8e-56 222.2 150 70.7
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 3.7e-56 221.9 149 69.8
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 6.3e-56 221.1 148 75.0
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 8.2e-56 220.7 151 72.8
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 8.2e-56 220.7 147 70.7
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 1.4e-55 219.9 151 71.5
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 6.9e-55 217.6 150 68.0
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 9.0e-55 217.2 148 70.3
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.2e-54 216.9 148 70.3
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 1.2e-54 216.9 151 71.5
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 1.5e-54 216.5 147 69.4
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 2.6e-54 215.7 149 71.8
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 7.6e-54 214.2 150 66.7
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.0e-53 213.8 150 70.0
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 3.8e-53 211.8 161 64.0
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 6.5e-53 211.1 151 69.5
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.4e-52 209.9 148 66.2
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 7.2e-52 207.6 154 65.6
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.6e-51 206.5 159 63.5
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.1e-51 206.1 153 65.4
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.5e-51 205.3 145 66.2
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.1e-51 204.5 145 66.2
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 7.9e-51 204.1 145 66.9
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 1.0e-50 203.8 158 62.7
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 1.3e-50 203.4 151 68.9
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.3e-50 202.6 154 64.3
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.3e-50 202.6 148 62.8
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 5.1e-50 201.4 155 63.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.7e-50 201.1 143 66.4
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.7e-50 200.7 157 68.8
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.9e-49 199.5 150 60.7
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 2.5e-49 199.1 148 61.5
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 4.3e-49 198.4 145 64.1
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 7.4e-49 197.6 148 64.2
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.3e-48 196.8 142 67.6
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.3e-48 196.8 155 62.6
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.3e-48 196.8 150 59.3
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 2.8e-48 195.7 151 61.6
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 2.8e-48 195.7 148 63.5
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 2.8e-48 195.7 158 57.0
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 6.3e-48 194.5 150 60.0
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 3.1e-47 192.2 157 57.3
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 3.1e-47 192.2 155 60.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 5.3e-47 191.4 153 60.1
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 2.6e-46 189.1 149 62.4
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 2.6e-46 189.1 150 57.3
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 7.7e-46 187.6 160 58.8
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 7.7e-46 187.6 144 64.6
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 1.7e-45 186.4 161 57.1
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.7e-45 186.4 150 56.7
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 4.2e-44 181.8 145 62.1
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 7.2e-44 181.0 148 58.1
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.2e-43 180.3 148 60.8
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.7e-43 179.1 148 56.8
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 3.0e-42 175.6 161 55.3
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 1.7e-40 169.9 149 54.4
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 4.8e-40 168.3 149 55.7
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 8.2e-40 167.5 150 54.7
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.4e-39 166.8 150 53.3
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.4e-39 166.8 151 54.3
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 3.1e-39 165.6 123 60.2
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 4.1e-39 165.2 150 53.3
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 5.3e-39 164.9 150 54.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 5.3e-39 164.9 155 52.9
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 9.1e-39 164.1 149 55.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 7.7e-38 161.0 148 51.4
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.0e-37 160.6 122 68.0
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.7e-37 159.8 151 51.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 3.8e-37 158.7 147 51.7
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 3.8e-37 158.7 147 50.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.8e-37 158.7 147 50.3
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 3.8e-37 158.7 147 51.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 8.5e-37 157.5 149 56.4
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 3.6e-35 152.1 147 49.0
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 3.6e-35 152.1 148 52.0
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.1e-35 151.4 156 51.3
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.3e-34 149.4 149 47.7
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 3.9e-34 148.7 155 53.5
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.7e-34 147.9 145 49.7
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.5e-33 146.7 156 50.6
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 4.4e-33 145.2 118 58.5
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 4.8e-32 141.7 161 42.9
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 7.7e-30 134.4 149 39.6
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 6.5e-29 131.3 149 41.6
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 1.8e-26 123.2 144 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 2.4e-23 112.8 144 37.5
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 6.5e-21 104.8 147 40.8
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 2.2e-16 89.7 62 69.4
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 9.1e-15 84.3 130 33.1
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 3.8e-13 79.0 58 65.5
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.5e-12 77.0 131 36.6
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 8.0e-11 71.2 141 36.9
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 9.8e-09 64.3 109 38.5
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 4.9e-08 62.0 166 28.9
MSTRG.6145 Avicennia marina HOM05D002728 ORTHO05D002874 2.0e-06 56.6 144 28.5


User provided reference genes

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