Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 9.9e-233 809.7 391 100.0
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.1e-190 669.1 386 83.4
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 4.4e-188 661.4 391 81.3
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 4.1e-186 654.8 386 79.0
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 3.5e-185 651.7 388 78.4
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 1.1e-175 620.2 402 75.4
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.7e-174 614.8 409 72.9
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 6.8e-173 610.9 455 67.3
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 2.0e-172 609.4 388 74.5
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 3.7e-171 605.1 388 74.7
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 4.1e-170 601.7 474 64.8
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 1.6e-169 599.7 355 82.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 4.5e-169 598.2 391 73.1
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 2.3e-168 595.9 386 73.1
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 2.1e-166 589.3 389 73.8
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 4.7e-166 588.2 388 72.4
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 1.7e-163 579.7 389 72.2
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 2.4e-162 575.9 395 70.6
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 4.1e-162 575.1 498 59.2
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 1.6e-161 573.2 386 70.5
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.0e-161 572.8 388 70.6
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.3e-160 570.1 383 69.5
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 6.6e-160 567.8 408 68.4
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.6e-158 563.1 392 68.6
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 2.1e-158 562.8 387 70.3
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 4.7e-158 561.6 395 68.4
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 6.2e-158 561.2 385 68.8
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 1.0e-157 560.5 387 68.7
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.4e-157 560.1 387 69.3
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.8e-157 559.7 387 69.8
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 5.2e-157 558.1 388 70.6
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 6.8e-157 557.8 388 70.6
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.2e-156 557.0 395 67.8
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 1.2e-156 557.0 391 67.5
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 1.5e-156 556.6 391 70.1
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 2.6e-156 555.8 412 66.3
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.7e-155 553.1 395 67.6
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.9e-155 552.4 388 67.0
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 2.9e-155 552.4 391 66.8
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.9e-155 552.4 425 63.8
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 2.9e-155 552.4 391 67.3
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 3.7e-155 552.0 404 65.8
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 4.9e-155 551.6 388 67.8
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 6.4e-155 551.2 416 66.8
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 8.3e-155 550.8 391 67.0
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 1.4e-154 550.1 386 69.7
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 5.4e-154 548.1 388 69.1
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 7.0e-154 547.7 421 63.9
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.2e-153 547.0 385 67.3
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 1.6e-153 546.6 387 67.2
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 3.5e-153 545.4 392 67.6
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 1.0e-152 543.9 387 67.2
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 3.9e-152 542.0 389 65.8
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 3.9e-152 542.0 387 66.9
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 6.6e-152 541.2 387 66.7
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 2.5e-151 539.3 387 65.9
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 9.5e-151 537.3 387 66.1
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 1.2e-150 537.0 389 66.3
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 2.1e-150 536.2 388 67.0
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 2.8e-150 535.8 387 66.1
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 4.7e-150 535.0 392 69.1
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 6.2e-150 534.6 386 67.9
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.1e-149 533.9 386 65.8
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.1e-149 533.9 386 65.8
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.8e-149 533.1 387 65.4
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 5.2e-149 531.6 385 67.0
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 2.0e-148 529.6 390 65.6
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 2.6e-148 529.3 388 66.5
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 4.4e-148 528.5 390 65.9
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 2.3e-144 516.2 371 67.4
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 6.6e-144 514.6 363 70.0
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 8.1e-142 507.7 391 65.2
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 7.6e-140 501.1 388 64.4
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 9.9e-140 500.7 367 66.5
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 5.1e-136 488.4 402 61.7
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 8.1e-134 481.1 400 58.5
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 2.6e-132 476.1 388 61.6
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 2.2e-131 473.0 500 51.0
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 3.8e-131 472.2 389 56.3
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 4.2e-130 468.8 390 59.0
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 2.7e-129 466.1 389 59.6
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 2.1e-126 456.4 386 60.4
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 3.6e-126 455.7 308 72.7
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.4e-124 448.7 380 60.5
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 5.8e-124 448.4 387 55.8
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 1.1e-122 444.1 386 55.7
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.8e-110 402.9 415 51.8
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 1.4e-106 390.6 282 66.0
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 1.0e-104 384.4 333 58.3
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 2.9e-99 366.3 232 73.3
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.0e-92 343.6 415 49.6
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 5.0e-91 339.0 389 46.0
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.5e-87 327.4 294 57.1
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 4.3e-87 325.9 388 44.6
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 4.1e-85 319.3 215 72.1
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 4.2e-82 309.3 362 49.4
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 1.2e-81 307.8 169 80.5
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 7.4e-79 298.5 385 40.5
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 9.7e-79 298.1 242 62.0
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.1e-74 284.6 172 74.4
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 2.0e-71 273.9 242 59.1
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-70 271.2 254 54.7
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 3.5e-68 263.1 150 76.7
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 9.4e-66 255.0 141 79.4
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 2.4e-61 240.4 406 38.7
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 2.1e-57 227.3 386 38.9
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 5.2e-56 222.6 163 64.4
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.4e-55 219.9 565 28.8
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.7e-54 217.6 121 81.8
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 1.4e-53 214.5 138 72.5
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 2.8e-49 200.3 129 69.8
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.0e-48 198.4 113 77.0
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 6.8e-48 195.7 248 43.1
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 5.9e-44 182.6 99 80.8
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 2.5e-42 177.2 272 39.3
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.3e-42 176.4 261 39.8
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 7.5e-39 165.6 179 51.4
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 9.2e-37 158.7 440 28.0
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 6.0e-36 156.0 79 88.6
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.1e-28 131.0 396 29.0
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 3.5e-28 130.2 232 37.9
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 3.5e-28 130.2 232 37.9
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.7e-27 127.9 177 40.7
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 2.3e-24 117.5 466 25.8
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 5.4e-21 106.3 418 29.2
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 2.3e-19 100.9 58 75.9
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 8.6e-19 99.0 54 83.3
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 1.6e-17 94.7 178 41.0
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 1.8e-16 91.3 53 75.5
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 6.9e-16 89.4 59 66.1
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 3.5e-12 77.0 40 90.0
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 3.6e-09 67.0 379 22.2
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 3.6e-09 67.0 389 23.7
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 6.2e-09 66.2 394 24.4
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.4e-08 65.1 41 68.3
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 4.5e-07 60.1 35 82.9
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 5.8e-07 59.7 31 77.4
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 7.6e-07 59.3 385 21.3
Cre10.g460100 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 9.9e-07 58.9 88 36.4
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 4.9e-06 56.6 96 32.3
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 6.4e-06 56.2 90 34.4
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 8.4e-06 55.8 96 32.3
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 8.4e-06 55.8 96 32.3


User provided reference genes

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