Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 4.9e-207 724.5 452 100.0
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 3.9e-132 475.7 462 71.6
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 1.5e-110 404.1 465 61.3
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-101 374.0 473 54.8
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 4.1e-89 332.8 461 53.1
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 5.0e-87 325.9 454 52.9
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 1.1e-86 324.7 465 49.7
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 2.5e-86 323.6 462 53.7
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.5e-83 314.3 462 56.3
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 1.5e-83 314.3 462 50.0
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 7.5e-83 312.0 462 56.3
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 1.9e-81 307.4 470 49.1
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 4.6e-80 302.8 462 46.5
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 5.6e-78 295.8 466 54.3
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 4.7e-77 292.7 464 52.4
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 3.1e-76 290.0 464 43.8
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 5.2e-76 289.3 465 49.5
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 6.8e-76 288.9 463 43.6
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 8.9e-76 288.5 459 52.3
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 1.2e-75 288.1 457 45.7
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.0e-75 287.3 464 43.5
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.0e-75 287.3 464 43.5
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 2.0e-75 287.3 468 45.1
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 1.7e-74 284.3 462 51.1
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.7e-74 284.3 470 43.4
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.7e-74 284.3 459 43.6
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 1.7e-74 284.3 461 46.4
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.2e-74 283.9 457 44.2
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 9.2e-73 278.5 453 47.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 2.1e-72 277.3 457 45.3
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 4.6e-72 276.2 534 47.4
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.7e-71 274.2 463 48.8
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 3.0e-71 273.5 467 49.5
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 6.6e-71 272.3 460 50.9
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 1.1e-70 271.6 457 45.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 4.7e-69 266.2 463 46.9
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 4.7e-69 266.2 471 48.6
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 8.1e-69 265.4 463 46.4
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 5.2e-68 262.7 457 43.5
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 8.9e-68 261.9 457 46.4
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 1.2e-67 261.5 450 49.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 4.4e-67 259.6 442 46.2
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 7.5e-67 258.8 462 47.8
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 3.2e-65 253.4 462 48.5
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 4.1e-65 253.1 434 42.6
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 2.7e-64 250.4 467 42.6
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 4.6e-64 249.6 458 45.0
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 1.7e-63 247.7 481 44.7
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 2.1e-61 240.7 458 42.4
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 4.0e-60 236.5 465 42.8
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 5.2e-60 236.1 472 44.5
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 2.0e-59 234.2 471 42.5
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 9.9e-59 231.9 417 46.8
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 8.4e-58 228.8 510 43.1
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 3.2e-57 226.9 459 42.0
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 4.2e-57 226.5 455 44.0
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 9.2e-57 225.3 467 43.9
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 7.8e-56 222.2 449 43.4
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 2.3e-55 220.7 462 46.1
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 8.7e-55 218.8 469 39.0
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 4.3e-54 216.5 443 41.5
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 9.6e-54 215.3 466 39.1
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-52 211.1 463 44.7
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 2.4e-52 210.7 368 47.0
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 3.1e-52 210.3 442 38.5
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 7.6e-51 205.7 465 41.7
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 1.4e-49 201.4 423 42.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 6.0e-48 196.1 467 42.0
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 1.3e-47 194.9 459 41.6
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 2.3e-47 194.1 437 38.4
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 2.5e-46 190.7 457 38.1
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 9.6e-46 188.7 457 40.3
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 6.2e-45 186.0 454 40.1
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 1.1e-44 185.3 457 37.6
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 3.8e-42 176.8 369 45.3
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 1.9e-41 174.5 460 38.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 3.2e-41 173.7 530 37.2
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 4.2e-41 173.3 471 37.4
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 4.6e-40 169.9 471 36.7
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 2.3e-39 167.5 368 44.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 2.8e-37 160.6 461 36.7
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 1.8e-36 157.9 467 36.8
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 6.9e-36 156.0 460 35.2
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 2.0e-35 154.5 454 33.7
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 7.6e-35 152.5 461 41.4
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.7e-34 151.4 452 35.4
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 1.7e-34 151.4 452 35.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 1.9e-33 147.9 446 35.9
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 2.5e-33 147.5 454 34.4
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.3e-31 141.7 459 37.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 1.8e-31 141.4 458 33.0
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 9.6e-30 135.6 459 37.5
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 1.3e-29 135.2 432 35.9
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 3.1e-28 130.6 537 31.3
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 1.5e-27 128.3 360 38.3
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.7e-23 112.8 424 33.5
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 5.0e-18 96.7 461 31.0
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 1.1e-17 95.5 407 30.7
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 1.4e-15 88.6 160 41.2
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-13 82.0 107 50.5
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.7e-13 80.5 126 47.6
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-12 79.0 61 70.5
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.8e-12 78.2 428 30.4
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-11 74.7 89 55.1
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-11 74.7 89 55.1
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 2.5e-09 67.8 54 68.5
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.0e-07 62.4 54 59.3
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 5.1e-07 60.1 363 33.3
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.1e-06 58.9 447 26.4
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 5.7e-06 56.6 59 59.3
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 5.7e-06 56.6 59 59.3


User provided reference genes

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