Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 2269.2 1167 100.0
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1767.7 1281 71.7
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1736.1 1283 70.5
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1655.6 1283 67.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1641.7 1282 67.6
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1640.6 1282 67.6
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1583.5 1286 64.9
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1579.3 1226 67.0
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1576.2 1281 64.5
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1572.0 1286 64.5
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1571.6 1282 65.1
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1571.2 1274 64.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1569.3 1284 65.1
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1568.5 1283 65.2
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1560.0 1284 65.4
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1558.5 1281 64.9
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1558.1 1285 63.9
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1557.7 1284 64.1
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1556.6 1281 64.6
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1554.7 1280 64.5
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1553.9 1285 64.4
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1553.9 1283 64.8
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1547.3 1282 63.9
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1544.6 1283 63.7
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1543.1 1281 63.5
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1533.9 1306 62.9
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1531.9 1281 63.5
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1530.0 1282 63.8
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1529.2 1281 63.6
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1523.8 1220 66.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1521.1 1281 63.5
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1520.8 1284 63.9
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1520.0 1286 62.5
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1519.2 1286 62.5
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1518.8 1286 62.5
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1515.7 1197 66.3
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1515.0 1286 62.4
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1508.8 1286 62.1
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1505.0 1281 61.2
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1500.3 1290 61.4
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1497.3 1276 61.6
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1497.3 1280 61.1
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1478.4 1278 62.1
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1473.0 1285 61.1
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1469.5 1283 61.5
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1467.2 1199 65.6
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1465.7 1281 60.4
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1465.3 1200 64.7
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1460.7 1268 60.1
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1280 60.0
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1454.9 1280 59.5
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1448.3 1281 59.9
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1437.2 1274 60.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1434.9 1281 60.0
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1434.5 1204 62.7
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1431.8 1281 58.9
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1419.1 1284 59.1
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1413.3 1186 61.9
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1411.4 1292 58.2
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1411.4 1228 60.7
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1409.8 1282 58.7
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1409.0 1286 58.3
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1409.0 1284 60.0
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1407.1 1284 58.8
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1404.4 1278 58.1
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1403.7 1275 58.5
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1397.5 1286 58.2
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1395.9 1294 58.1
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1394.8 1230 62.0
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1394.0 1285 58.5
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1389.0 1271 59.0
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1377.1 1285 57.4
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1332.0 1279 56.5
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1327.0 1279 55.8
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1325.5 1279 56.1
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1324.3 1443 52.5
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1324.3 1279 56.1
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1320.1 1053 66.7
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1315.8 1281 55.4
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1315.1 1279 56.1
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1304.3 1282 54.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1301.2 1282 54.8
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1299.3 1155 61.6
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1291.2 1283 54.7
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1290.8 1307 53.8
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1270.4 1058 62.9
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1239.2 1291 51.5
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1215.3 1275 52.5
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1187.2 1293 49.4
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1184.1 1093 58.6
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1174.5 1068 57.7
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1161.0 1288 50.2
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1156.0 1051 58.2
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1134.4 1102 55.8
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1134.0 1305 50.5
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 3.9e-309 1065.1 951 60.5
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 1.6e-302 1043.1 1254 49.0
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 1.3e-296 1023.5 905 59.1
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.5e-289 998.4 818 66.0
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.2e-277 958.4 1256 44.3
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.1e-270 936.4 710 70.6
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.4e-205 720.3 1349 35.1
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 6.5e-195 685.6 1271 35.8
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 2.3e-192 677.2 843 45.0
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 8.4e-187 658.7 1139 35.6
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 7.4e-183 645.6 1144 37.6
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 2.0e-164 584.3 761 46.5
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 8.6e-139 499.2 376 65.7
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 8.3e-134 482.6 415 64.1
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 4.3e-122 443.7 311 73.6
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.5e-119 435.3 1490 28.0
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 2.8e-105 387.9 328 64.6
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 4.6e-84 317.4 249 61.0
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.9e-69 268.9 196 74.5
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 3.1e-64 251.5 1431 24.6
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 5.3e-64 250.8 526 38.2
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 4.8e-57 227.6 304 43.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 7.7e-55 220.3 167 72.5
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.0e-43 183.3 1275 22.0
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.2e-41 175.6 130 70.8
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 7.0e-40 170.6 239 41.4
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.5e-39 167.9 121 71.9
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 9.4e-37 160.2 260 38.1
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.6e-31 142.9 1334 24.5
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 2.3e-19 102.4 75 64.0
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.7e-17 95.1 67 73.1


User provided reference genes

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