Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 5145.9 2607 100.0
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 5006.8 2608 97.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 3282.7 2621 66.1
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 3268.0 2686 64.7
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 3050.8 2639 61.4
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2943.3 2623 59.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2934.4 2742 59.5
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2915.6 2621 58.7
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2878.2 2701 57.9
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2859.7 2630 58.1
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2779.2 2629 59.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2761.5 2620 56.4
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2728.7 2680 55.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2720.7 2618 56.2
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2720.3 2638 56.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2695.6 2622 55.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2681.0 2632 54.4
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2654.4 2643 54.6
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2632.4 2618 54.8
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2609.7 2641 54.7
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2609.3 2640 53.8
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2558.5 2627 53.0
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2535.4 2624 52.5
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2517.7 2625 52.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2508.8 2615 53.0
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2508.4 2390 56.2
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2495.3 2617 52.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 2471.4 2620 51.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 2459.5 2618 51.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2438.7 2788 49.7
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2427.9 2624 50.4
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2404.4 2613 50.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2403.6 2619 50.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2403.6 2278 56.4
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2384.0 2672 49.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 2378.2 2617 50.5
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 2345.1 2681 50.1
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2338.1 2599 49.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 2312.7 2570 51.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 2311.2 2618 48.2
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 2308.9 2611 50.8
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2302.3 2663 48.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2297.7 2628 48.5
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 2287.3 2645 48.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 2285.8 2683 48.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2276.5 2629 48.1
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2275.0 2679 48.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2269.2 2607 49.1
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2268.4 2636 47.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2263.4 2624 48.8
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2261.5 2684 48.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 2245.3 2571 51.1
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2232.6 2623 47.9
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2231.8 2612 47.3
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2222.2 2611 46.9
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2208.3 2609 47.7
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2198.7 2625 46.8
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 2187.5 2599 47.7
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 2181.0 2567 49.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 2159.0 2600 47.4
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2155.9 2646 46.9
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 2155.2 2577 47.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 2150.9 2601 47.3
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 2150.9 2599 46.7
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 2090.8 2628 45.8
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2085.5 2598 46.1
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2069.7 2594 46.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 2052.7 2631 45.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2018.4 2304 50.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2014.2 2335 49.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2012.7 2558 46.2
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 2000.3 2662 44.3
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1963.7 2061 52.4
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1959.1 1800 57.8
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1951.4 2618 43.7
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1919.4 2696 43.4
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1863.2 2043 49.9
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1845.5 2471 44.5
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1826.6 2149 47.5
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1822.8 2649 42.6
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1820.4 2641 42.4
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1811.2 2673 41.8
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1801.9 2682 42.1
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1754.2 2622 41.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1714.5 2672 39.8
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1662.1 2653 40.9
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1658.3 2630 40.2
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1657.1 2380 42.6
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1650.6 1764 51.4
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1624.0 2610 40.0
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1611.3 2034 43.8
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1605.1 1826 51.5
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1553.5 2252 42.1
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1547.3 1737 50.1
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1404.4 2244 40.1
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1374.8 2163 40.3
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1263.1 2535 35.4
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 0.0e+00 1168.3 914 66.6
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1151.3 782 75.4
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.7e-259 900.2 813 57.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 6.2e-246 856.3 2776 27.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.7e-238 830.1 592 73.6
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 5.8e-236 823.2 2593 27.9
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.5e-231 807.7 1161 43.9
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.8e-221 775.0 2797 26.2
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.8e-220 770.0 1256 39.4
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.4e-218 765.4 1170 40.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.9e-216 757.3 1162 43.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.8e-206 723.8 627 62.5
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.1e-202 712.6 2626 27.0
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 2.6e-196 691.4 2791 26.0
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.5e-188 665.6 658 58.1
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.8e-173 615.5 553 58.8
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.2e-169 602.8 638 52.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 5.7e-167 594.0 732 47.3
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-165 589.0 918 38.2
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.4e-159 568.2 775 43.7
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.1e-153 547.4 399 69.7
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.4e-136 493.0 534 48.9
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.1e-121 440.7 934 34.2
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.7e-113 414.8 482 46.5
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.7e-108 399.1 726 36.6
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 7.8e-108 397.5 325 63.7
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.4e-104 386.7 2689 22.4
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-100 371.3 470 46.6
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 9.9e-95 354.0 343 57.1
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.1e-92 346.3 390 50.5
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 8.5e-62 244.6 498 34.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 7.4e-58 231.5 346 39.3
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 9.7e-58 231.1 186 66.1
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 4.5e-55 222.2 183 60.1
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 2.2e-54 219.9 234 53.0
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.2e-53 216.1 222 54.1
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.2e-53 215.7 349 37.5
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.0e-52 211.5 331 38.7
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.4e-51 210.7 241 49.8
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 1.5e-45 190.7 339 38.3
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.2e-45 188.3 301 41.2
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.4e-40 174.1 149 61.1
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 4.1e-40 172.6 207 48.3
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.9e-38 166.4 166 50.0
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 7.5e-34 151.8 335 33.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.4e-32 146.7 235 42.6
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 4.1e-32 146.0 138 55.1
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.8e-30 139.4 120 57.5
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.6e-29 135.6 126 54.0
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.6e-28 132.9 414 25.8
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.7e-25 122.9 364 29.1
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.4e-24 120.2 82 70.7
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 4.6e-23 115.9 154 46.1
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.0e-22 114.8 130 55.4
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 6.6e-22 112.1 398 24.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.5e-21 110.9 169 39.6
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 6.8e-19 102.1 79 59.5
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 8.9e-19 101.7 335 26.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 8.9e-19 101.7 335 26.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-18 101.3 382 25.1
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 9.8e-18 98.2 116 45.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.7e-17 97.4 136 46.3
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.4e-16 93.6 148 33.1
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 9.2e-16 91.7 67 56.7
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 1.6e-15 90.9 104 46.2
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 3.9e-14 86.3 264 28.4
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 8.6e-14 85.1 113 40.7
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 7.3e-13 82.0 355 22.8
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-12 81.3 233 27.5
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 4.7e-12 79.3 265 27.5
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-10 74.7 215 30.7
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.6e-10 73.6 62 56.5
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.7e-09 70.9 67 55.2
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 1.4e-08 67.8 51 62.7
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 4.1e-08 66.2 51 60.8
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 4.6e-07 62.8 128 32.8
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-07 62.8 53 56.6
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-07 62.8 53 56.6
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 6.0e-07 62.4 47 61.7
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-06 61.2 90 38.9
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.0e-06 60.1 105 27.6


User provided reference genes

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