Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31261 Davidia involucrata HOM05D003445 ORTHO05D045149 1.3e-92 343.2 189 100.0
Dinv36360 Davidia involucrata HOM05D003445 ORTHO05D004114 3.9e-25 119.0 64 92.2
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 2.5e-24 116.3 68 80.9
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 6.2e-23 111.7 64 85.9
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.8e-22 110.2 68 77.9
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.8e-22 110.2 68 77.9
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 2.4e-22 109.8 68 77.9
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 3.1e-22 109.4 68 76.5
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 3.1e-22 109.4 68 77.9
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 3.1e-22 109.4 68 77.9
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 4.0e-22 109.0 68 76.5
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 6.9e-22 108.2 68 75.0
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 9.0e-22 107.8 67 79.1
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 1.2e-21 107.5 68 75.0
CSS0001382 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 1.5e-21 107.1 64 82.8
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 1.5e-21 107.1 68 75.0
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 2.6e-21 106.3 68 73.5
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 2.6e-21 106.3 68 73.5
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 2.6e-21 106.3 65 78.5
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 3.4e-21 105.9 68 73.5
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 3.4e-21 105.9 68 76.5
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 4.5e-21 105.5 68 73.5
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 7.6e-21 104.8 64 79.7
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 7.6e-21 104.8 68 73.5
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 7.6e-21 104.8 68 73.5
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 7.6e-21 104.8 68 76.5
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 9.9e-21 104.4 68 75.0
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 9.9e-21 104.4 68 73.5
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 1.3e-20 104.0 68 75.0
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 1.7e-20 103.6 68 75.0
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 2.2e-20 103.2 68 69.1
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 2.2e-20 103.2 68 69.1
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 2.2e-20 103.2 64 78.1
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 2.9e-20 102.8 68 72.1
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 2.9e-20 102.8 68 73.5
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 3.8e-20 102.4 68 73.5
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 3.8e-20 102.4 66 75.8
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 4.9e-20 102.1 68 72.1
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 4.9e-20 102.1 65 75.4
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 4.9e-20 102.1 66 74.2
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 6.4e-20 101.7 68 72.1
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 8.4e-20 101.3 68 70.6
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 8.4e-20 101.3 68 70.6
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 1.1e-19 100.9 63 74.6
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 1.1e-19 100.9 68 72.1
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 1.1e-19 100.9 66 74.2
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 1.1e-19 100.9 66 71.2
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 1.4e-19 100.5 63 76.2
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 1.4e-19 100.5 66 72.7
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 1.9e-19 100.1 68 69.1
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.9e-19 100.1 64 76.6
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.9e-19 100.1 64 76.6
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.9e-19 100.1 64 76.6
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 1.9e-19 100.1 67 68.7
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 1.9e-19 100.1 67 67.2
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 2.5e-19 99.8 67 77.6
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 2.5e-19 99.8 67 77.6
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 2.5e-19 99.8 63 76.2
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 2.5e-19 99.8 66 72.7
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 3.2e-19 99.4 66 68.2
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 4.2e-19 99.0 66 69.7
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 4.2e-19 99.0 63 76.2
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 7.1e-19 98.2 64 78.1
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 9.3e-19 97.8 63 71.4
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 9.3e-19 97.8 64 75.0
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.2e-18 97.4 68 67.6
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 1.2e-18 97.4 63 71.4
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 1.2e-18 97.4 66 71.2
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 1.6e-18 97.1 63 73.0
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.6e-18 97.1 63 73.0
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.6e-18 97.1 64 73.4
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 2.1e-18 96.7 66 72.7
ClCG05G021420 Citrullus lanatus HOM05D003445 ORTHO05D004114 2.7e-18 96.3 63 71.4
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 2.7e-18 96.3 68 69.1
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 2.7e-18 96.3 66 71.2
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 3.5e-18 95.9 66 72.7
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 3.5e-18 95.9 65 67.7
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 4.6e-18 95.5 68 66.2
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 6.0e-18 95.1 68 66.2
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 7.9e-18 94.7 64 71.9
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 7.9e-18 94.7 68 66.2
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 7.9e-18 94.7 63 69.8
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 7.9e-18 94.7 63 73.0
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.0e-17 94.4 68 66.2
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 1.0e-17 94.4 68 67.6
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 1.0e-17 94.4 63 69.8
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 1.0e-17 94.4 62 72.6
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 1.3e-17 94.0 63 69.8
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 1.3e-17 94.0 63 69.8
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.8e-17 93.6 64 75.0
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 1.8e-17 93.6 64 73.4
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 2.3e-17 93.2 68 64.7
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 2.3e-17 93.2 68 64.7
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 2.3e-17 93.2 68 64.7
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 2.3e-17 93.2 65 67.7
Os02g0822300 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 2.3e-17 93.2 68 67.6
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 3.0e-17 92.8 68 63.2
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 3.0e-17 92.8 68 63.2
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 3.9e-17 92.4 67 65.7
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 3.9e-17 92.4 68 63.2
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 3.9e-17 92.4 68 63.2
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 3.9e-17 92.4 68 63.2
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 3.9e-17 92.4 64 68.8
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 5.1e-17 92.0 68 64.7
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 5.1e-17 92.0 68 64.7
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 5.1e-17 92.0 68 66.2
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 6.7e-17 91.7 68 66.2
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 6.7e-17 91.7 64 70.3
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 1.1e-16 90.9 68 63.2
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 1.1e-16 90.9 64 68.8
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 1.1e-16 90.9 68 63.2
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 1.5e-16 90.5 66 65.2
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 1.5e-16 90.5 66 65.2
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 1.5e-16 90.5 66 65.2
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 2.5e-16 89.7 68 64.7
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 4.3e-16 89.0 68 66.2
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 5.6e-16 88.6 68 58.8
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 5.6e-16 88.6 68 63.2
Nitab4.5_0004047g0040 Nicotiana tabacum HOM05D003445 ORTHO05D045149 5.6e-16 88.6 55 78.2
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 5.6e-16 88.6 64 67.2
CDE06G1707 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 7.4e-16 88.2 63 71.4
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 7.4e-16 88.2 68 63.2
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 9.6e-16 87.8 64 65.6
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 9.6e-16 87.8 68 66.2
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 1.3e-15 87.4 64 65.6
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 1.3e-15 87.4 63 71.4
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.3e-15 87.4 66 66.7
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 1.6e-15 87.0 64 65.6
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 1.6e-15 87.0 64 65.6
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 2.1e-15 86.7 64 65.6
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 2.1e-15 86.7 68 61.8
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 2.1e-15 86.7 64 65.6
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 2.1e-15 86.7 64 67.2
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 2.1e-15 86.7 64 67.2
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 2.1e-15 86.7 64 67.2
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 2.8e-15 86.3 68 58.8
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 3.7e-15 85.9 66 65.2
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 6.2e-15 85.1 63 68.3
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 6.2e-15 85.1 64 64.1
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 6.2e-15 85.1 64 64.1
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 8.2e-15 84.7 64 62.5
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 8.2e-15 84.7 65 63.1
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 1.4e-14 84.0 68 61.8
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 6.9e-14 81.6 68 58.8
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 6.9e-14 81.6 63 65.1
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 9.0e-14 81.3 66 63.6
DCAR_006384 Daucus carota HOM05D003445 ORTHO05D004114 2.0e-13 80.1 65 60.0
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 2.6e-13 79.7 72 58.3
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 3.4e-13 79.3 68 58.8
SEGI_38080 Sequoiadendron giganteum HOM05D003445 ORTHO05D004114 5.8e-13 78.6 67 55.2
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 1.7e-12 77.0 66 60.6
BcaNung04928 Brassica carinata HOM05D003445 ORTHO05D004114 4.9e-12 75.5 63 65.1
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 6.5e-12 75.1 64 59.4
HanXRQChr14g0456171 Helianthus annuus HOM05D003445 ORTHO05D004114 8.4e-12 74.7 64 62.5
AagrBONN_evm.TU.Sc2ySwM_228.931 Anthoceros agrestis HOM05D003445 ORTHO05D004114 1.1e-11 74.3 65 50.8
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 1.4e-11 73.9 66 57.6
Lsat_1_v5_gn_6_10360 Lactuca sativa HOM05D001160 ORTHO05D020312 1.4e-11 73.9 68 52.9
Mapoly0060s0047 Marchantia polymorpha HOM05D003445 ORTHO05D004114 1.9e-11 73.6 66 50.0
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 9.3e-11 71.2 63 57.1
A05p38680 Brassica napus HOM05D003445 ORTHO05D004114 1.0e-09 67.8 63 60.3
BraA05t22659Z Brassica rapa HOM05D003445 ORTHO05D004114 1.3e-09 67.4 63 60.3
CBR_g30931 Chara braunii HOM05D003445 ORTHO05D004114 3.0e-09 66.2 63 47.6
BcaC05g29458 Brassica carinata HOM05D003445 ORTHO05D004114 5.1e-09 65.5 62 59.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 6.7e-09 65.1 35 85.7
Sp3g08770 Schrenkiella parvula HOM05D003445 ORTHO05D004114 6.7e-09 65.1 60 53.3
C05p57550 Brassica napus HOM05D003445 ORTHO05D004114 2.5e-08 63.2 62 56.5
BolC5t34412H Brassica oleracea HOM05D003445 ORTHO05D004114 2.5e-08 63.2 62 56.5
SMO347G0528 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 7.4e-08 61.6 64 43.8
SMO340G0186 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 6.3e-07 58.5 72 44.4
Lj3C935G7 Lonicera japonica HOM05D003445 ORTHO05D004114 3.1e-06 56.2 30 86.7
Nitab4.5_0008349g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 5.3e-06 55.5 52 59.6


User provided reference genes

Program Settings