Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31260 Davidia involucrata HOM05D003445 ORTHO05D004114 7.5e-77 290.4 145 100.0
Dinv36360 Davidia involucrata HOM05D003445 ORTHO05D004114 3.1e-30 135.6 70 94.3
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 1.5e-29 133.3 70 90.0
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 2.0e-29 132.9 70 88.6
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 2.0e-29 132.9 70 87.1
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 2.6e-29 132.5 70 88.6
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 2.6e-29 132.5 70 88.6
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 2.6e-29 132.5 70 88.6
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 3.4e-29 132.1 70 87.1
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 2.9e-28 129.0 70 84.3
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 2.9e-28 129.0 70 88.6
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 3.8e-28 128.6 70 88.6
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 6.4e-28 127.9 69 87.0
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 8.4e-28 127.5 70 85.7
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 8.4e-28 127.5 70 84.3
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 1.1e-27 127.1 68 85.3
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 1.4e-27 126.7 70 85.7
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 1.4e-27 126.7 70 85.7
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 1.4e-27 126.7 69 84.1
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 1.4e-27 126.7 73 80.8
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.4e-27 126.7 73 78.1
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.4e-27 126.7 73 78.1
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.4e-27 126.7 73 78.1
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 2.4e-27 125.9 70 84.3
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 4.2e-27 125.2 70 82.9
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 5.5e-27 124.8 69 82.6
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 7.1e-27 124.4 70 82.9
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 9.3e-27 124.0 73 78.1
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 9.3e-27 124.0 71 84.5
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 1.2e-26 123.6 69 81.2
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 1.2e-26 123.6 69 79.7
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.2e-26 123.6 73 78.1
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 1.6e-26 123.2 73 79.5
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 2.1e-26 122.9 73 78.1
Lj3C935G7 Lonicera japonica HOM05D003445 ORTHO05D004114 3.5e-26 122.1 75 80.0
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 6.0e-26 121.3 71 77.5
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 6.0e-26 121.3 70 82.9
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 7.9e-26 120.9 70 78.6
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 1.0e-25 120.6 70 75.7
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.3e-25 120.2 73 75.3
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.3e-25 120.2 73 75.3
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.3e-25 120.2 73 75.3
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 1.3e-25 120.2 75 76.0
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 1.8e-25 119.8 73 76.7
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 1.8e-25 119.8 68 80.9
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 1.8e-25 119.8 70 77.1
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 2.3e-25 119.4 73 75.3
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 2.3e-25 119.4 73 78.1
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 3.0e-25 119.0 71 74.6
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 3.9e-25 118.6 71 80.3
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 3.9e-25 118.6 71 80.3
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 3.9e-25 118.6 71 74.6
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 3.9e-25 118.6 71 74.6
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 3.9e-25 118.6 68 83.8
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 3.9e-25 118.6 70 78.6
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 3.9e-25 118.6 73 78.1
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 3.9e-25 118.6 69 76.8
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 5.1e-25 118.2 70 78.6
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 5.1e-25 118.2 70 74.3
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 6.7e-25 117.9 70 78.6
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 6.7e-25 117.9 70 78.6
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 6.7e-25 117.9 69 78.3
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 8.7e-25 117.5 71 77.5
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 8.7e-25 117.5 71 78.9
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 8.7e-25 117.5 70 77.1
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 1.1e-24 117.1 72 76.4
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 1.1e-24 117.1 72 77.8
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 1.5e-24 116.7 71 77.5
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 1.5e-24 116.7 68 82.4
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 1.5e-24 116.7 69 79.7
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 2.5e-24 115.9 75 72.0
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 2.5e-24 115.9 71 70.4
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 2.5e-24 115.9 70 71.4
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 3.3e-24 115.5 70 71.4
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 3.3e-24 115.5 70 75.7
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 4.3e-24 115.2 70 70.0
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 4.3e-24 115.2 70 71.4
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 4.3e-24 115.2 71 76.1
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 5.6e-24 114.8 75 72.0
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 5.6e-24 114.8 69 73.9
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 5.6e-24 114.8 69 75.4
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 70.0
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 70.0
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 70.0
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 7.4e-24 114.4 71 77.5
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 70.0
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 74.3
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 7.4e-24 114.4 70 75.7
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 9.6e-24 114.0 70 68.6
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 9.6e-24 114.0 66 78.8
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 9.6e-24 114.0 69 73.9
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 9.6e-24 114.0 73 82.2
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 1.3e-23 113.6 71 70.4
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 1.3e-23 113.6 71 70.4
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 1.3e-23 113.6 71 70.4
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 1.3e-23 113.6 71 70.4
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.3e-23 113.6 70 81.4
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.6e-23 113.2 66 78.8
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 1.6e-23 113.2 70 68.6
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 1.6e-23 113.2 74 74.3
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 1.6e-23 113.2 73 74.0
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 1.6e-23 113.2 70 68.6
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 2.1e-23 112.8 71 77.5
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 2.8e-23 112.5 70 72.9
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 3.7e-23 112.1 70 68.6
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 4.8e-23 111.7 73 72.6
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 8.2e-23 110.9 73 72.6
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 8.2e-23 110.9 73 75.3
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 1.1e-22 110.5 70 65.7
ClCG05G021420 Citrullus lanatus HOM05D003445 ORTHO05D004114 1.4e-22 110.2 96 59.4
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.4e-22 110.2 67 82.1
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 1.4e-22 110.2 70 71.4
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 1.8e-22 109.8 68 69.1
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 1.8e-22 109.8 71 73.2
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 5.3e-22 108.2 78 74.4
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 5.3e-22 108.2 78 74.4
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 5.3e-22 108.2 70 70.0
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 6.9e-22 107.8 64 75.0
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 9.0e-22 107.5 79 68.4
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 1.2e-21 107.1 79 68.4
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 2.0e-21 106.3 86 64.0
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 3.4e-21 105.5 81 63.0
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 4.5e-21 105.1 80 68.8
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 4.5e-21 105.1 80 68.8
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 1.0e-20 104.0 73 68.5
HanXRQChr14g0456171 Helianthus annuus HOM05D003445 ORTHO05D004114 1.3e-20 103.6 68 69.1
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 1.3e-20 103.6 79 67.1
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 1.7e-20 103.2 69 66.7
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 1.7e-20 103.2 69 66.7
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 1.7e-20 103.2 69 66.7
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 1.7e-20 103.2 69 66.7
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 1.7e-20 103.2 69 66.7
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 2.9e-20 102.4 80 65.0
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 6.5e-20 101.3 80 62.5
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 4.2e-19 98.6 81 59.3
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 9.3e-19 97.4 66 72.7
Solyc09g150121.1 Solanum lycopersicum HOM05D003445 ORTHO05D004114 9.3e-19 97.4 80 60.0
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 9.3e-19 97.4 80 60.0
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 9.3e-19 97.4 80 60.0
Os02g0822300 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 1.2e-18 97.1 89 53.9
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 1.2e-18 97.1 81 59.3
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 1.6e-18 96.7 89 55.1
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 1.6e-18 96.7 81 60.5
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 3.5e-18 95.5 81 61.7
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 3.5e-18 95.5 80 57.5
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 3.5e-18 95.5 81 59.3
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 6.0e-18 94.7 54 79.6
CDE06G1707 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 1.8e-17 93.2 84 58.3
Nitab4.5_0004047g0030 Nicotiana tabacum HOM05D003445 ORTHO05D004114 2.3e-17 92.8 54 75.9
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 5.1e-17 91.7 78 59.0
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 1.1e-16 90.5 79 58.2
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 2.5e-16 89.4 84 54.8
BcaNung04621 Brassica carinata HOM05D003445 ORTHO05D004114 5.7e-16 88.2 58 67.2
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 2.8e-15 85.9 48 85.4
Sp3g08770 Schrenkiella parvula HOM05D003445 ORTHO05D004114 6.3e-15 84.7 57 68.4
A05p38680 Brassica napus HOM05D003445 ORTHO05D004114 8.2e-15 84.3 60 65.0
C05p57550 Brassica napus HOM05D003445 ORTHO05D004114 8.2e-15 84.3 60 65.0
BolC5t34412H Brassica oleracea HOM05D003445 ORTHO05D004114 8.2e-15 84.3 60 65.0
BraA05t22659Z Brassica rapa HOM05D003445 ORTHO05D004114 8.2e-15 84.3 60 65.0
BcaC05g29458 Brassica carinata HOM05D003445 ORTHO05D004114 1.4e-14 83.6 60 65.0
DCAR_006384 Daucus carota HOM05D003445 ORTHO05D004114 1.4e-14 83.6 73 58.9
Oeu015056.1 Olea europaea HOM05D003445 ORTHO05D010382 2.4e-14 82.8 54 72.2
BcaNung04928 Brassica carinata HOM05D003445 ORTHO05D004114 6.9e-14 81.3 60 63.3
BcaB05g22515 Brassica carinata HOM05D005757 ORTHO05D007090 5.0e-12 75.1 49 67.3
SGA_v2.0_scaffold62G21367 Striga asiatica HOM05D003445 ORTHO05D004114 5.0e-12 75.1 77 51.9
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 8.5e-12 74.3 42 76.2
Os01g0533450 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 3.2e-11 72.4 73 53.4
SEGI_38080 Sequoiadendron giganteum HOM05D003445 ORTHO05D004114 7.2e-11 71.2 93 38.7
SalBow6G0311 Salvia bowleyana HOM05D003445 ORTHO05D050775 3.6e-10 68.9 46 76.1
SMO347G0528 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 3.6e-10 68.9 50 60.0
SMO340G0186 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 3.0e-09 65.9 53 52.8
PRCOL_00000948 Prasinoderma coloniale HOM05D003445 ORTHO05D004114 6.7e-09 64.7 48 58.3
CBR_g30931 Chara braunii HOM05D003445 ORTHO05D004114 3.3e-08 62.4 48 52.1
MCO01G249 Micromonas commoda HOM05D003445 ORTHO05D004114 7.4e-08 61.2 48 58.3
Mapoly0060s0047 Marchantia polymorpha HOM05D003445 ORTHO05D004114 1.3e-07 60.5 50 50.0


User provided reference genes

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