Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-230 802.7 389 100.0
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-230 802.7 389 100.0
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.5e-160 567.8 443 67.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.5e-160 567.8 443 67.5
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.5e-159 565.8 449 65.7
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.2e-158 563.5 447 66.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.2e-156 557.0 447 65.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 7.5e-156 554.3 443 66.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 9.1e-154 547.4 448 63.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 2.0e-153 546.2 461 62.0
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.3e-152 542.7 451 63.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.0e-152 541.6 441 63.0
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.1e-150 536.2 441 62.4
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 2.0e-148 529.6 454 61.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.6e-148 529.3 443 61.9
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.4e-148 528.5 440 60.7
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 7.5e-148 527.7 445 60.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 7.5e-148 527.7 450 62.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.3e-147 526.9 441 62.6
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.3e-147 526.9 397 68.0
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.7e-147 526.6 441 61.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.7e-147 526.6 455 59.8
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 2.2e-147 526.2 447 62.2
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 2.2e-147 526.2 455 60.9
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 2.2e-147 526.2 455 61.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.8e-147 525.8 446 60.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 6.3e-147 524.6 441 63.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 8.3e-147 524.2 442 62.4
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.1e-146 523.9 441 61.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.8e-146 523.1 535 54.2
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.8e-146 523.1 455 61.3
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.0e-146 521.2 445 61.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 9.2e-146 520.8 458 60.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.2e-145 520.4 445 61.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.7e-145 519.2 440 59.1
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.7e-145 519.2 442 61.5
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 7.8e-145 517.7 425 64.0
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.0e-144 517.3 440 58.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.0e-144 517.3 440 59.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 5.0e-144 515.0 442 60.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.6e-144 514.2 448 60.7
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.3e-143 512.3 444 59.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 9.5e-143 510.8 437 60.6
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.6e-142 510.0 446 59.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.1e-142 509.6 442 59.3
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-142 509.2 435 61.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 6.1e-142 508.1 449 59.9
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.1e-142 508.1 450 59.3
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.0e-142 507.7 434 61.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 8.9e-141 504.2 458 59.8
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.2e-140 503.8 447 60.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.6e-140 502.7 473 56.7
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 5.8e-140 501.5 447 58.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.7e-139 500.0 443 58.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.9e-139 498.4 466 57.1
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.9e-138 496.5 444 58.1
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.9e-138 496.5 443 57.8
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 3.5e-137 492.3 442 58.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.3e-136 490.3 427 60.2
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 2.3e-136 489.6 443 57.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.3e-136 489.6 443 57.3
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.9e-136 488.8 446 57.6
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.1e-135 487.3 446 57.0
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.5e-135 486.1 442 57.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 2.5e-135 486.1 447 55.7
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 3.3e-135 485.7 427 60.7
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.2e-134 483.8 447 55.7
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.6e-134 483.4 449 55.7
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.8e-134 482.6 443 57.3
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.8e-133 479.9 443 56.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.1e-133 479.2 443 56.7
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.2e-132 477.2 453 56.7
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.1e-130 468.8 442 55.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.9e-128 462.2 444 55.2
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.3e-127 458.8 441 54.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.8e-125 453.4 446 53.4
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.1e-122 444.1 442 53.4
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 4.1e-122 442.2 452 53.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.1e-121 439.9 443 53.3
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.5e-121 439.1 453 52.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 6.0e-121 438.3 453 52.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 3.9e-120 435.6 473 50.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.1e-119 434.1 469 50.7
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.6e-118 430.3 442 51.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.6e-118 430.3 442 51.8
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 6.8e-117 424.9 396 58.3
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 2.0e-116 423.3 441 50.8
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.3e-115 420.6 494 48.0
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.9e-115 418.7 388 56.4
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 8.1e-110 401.4 386 54.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.9e-106 390.2 439 49.0
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.1e-105 386.7 480 46.9
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 4.9e-99 365.5 243 74.5
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 4.8e-94 349.0 395 48.1
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.5e-92 342.4 505 39.8
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 6.5e-91 338.6 500 39.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 7.1e-90 335.1 460 42.0
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.3e-87 326.2 312 54.5
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-86 323.2 470 40.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.4e-85 320.9 223 73.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 5.8e-84 315.5 238 68.1
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-81 306.2 451 40.1
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 6.1e-81 305.4 277 57.8
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.9e-81 305.1 451 39.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 3.0e-80 303.1 240 62.1
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-79 300.1 451 39.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 7.4e-79 298.5 444 41.0
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.8e-78 295.8 451 39.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.4e-76 289.7 240 60.8
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.9e-69 265.4 241 60.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-64 250.8 269 48.7
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-57 228.0 272 45.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-53 213.4 259 43.6
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.9e-52 209.1 452 31.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 8.5e-51 205.3 145 69.7
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.9e-50 204.1 400 36.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-48 198.0 364 36.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 8.8e-48 195.3 139 66.2
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.1e-45 186.8 401 31.9
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.4e-45 186.0 111 79.3
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.2e-38 164.1 138 59.4
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 7.0e-37 159.1 351 32.2
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.9e-35 153.7 130 63.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.6e-33 146.7 400 30.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.4e-32 144.8 123 59.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 5.0e-27 126.3 117 55.6
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.6e-27 125.6 83 78.3
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 7.3e-26 122.5 193 39.4
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.2e-25 119.4 143 45.5
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.0e-23 114.4 78 62.8
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.9e-19 100.1 144 40.3
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.5e-18 97.4 65 70.8
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-17 94.0 130 44.6
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-15 88.2 82 61.0
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 2.2e-14 84.3 101 39.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 8.3e-14 82.4 154 29.9
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 4.3e-10 70.1 88 45.5
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-09 68.6 137 29.9
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 3.6e-09 67.0 73 41.1
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.7e-06 57.0 72 43.1


User provided reference genes

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