Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 1.0e-78 296.6 143 100.0
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 2.8e-36 155.6 105 70.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 6.3e-36 154.5 144 59.0
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 3.3e-08 62.4 51 60.8
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.3e-08 62.0 39 76.9
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 7.3e-08 61.2 45 64.4
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 7.3e-08 61.2 45 64.4
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 9.5e-08 60.8 45 64.4
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.2e-07 60.5 44 65.9
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 1.2e-07 60.5 44 65.9
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.6e-07 60.1 45 62.2
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 1.6e-07 60.1 44 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 2.1e-07 59.7 45 62.2
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 2.8e-07 59.3 44 63.6
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 2.8e-07 59.3 44 63.6
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.8e-07 59.3 45 62.2
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 3.6e-07 58.9 45 62.2
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 3.6e-07 58.9 44 63.6
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 3.6e-07 58.9 44 63.6
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 4.7e-07 58.5 44 63.6
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 62.2
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.7e-07 58.5 45 60.0
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 8.1e-07 57.8 45 60.0
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 8.1e-07 57.8 44 63.6
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 8.1e-07 57.8 45 62.2
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.8e-06 56.6 41 65.9
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.4e-06 56.2 41 68.3
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.2e-06 55.1 45 60.0
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 6.8e-06 54.7 54 55.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 8.9e-06 54.3 49 61.2


User provided reference genes

Program Settings