Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 6.7e-190 667.2 329 100.0
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 1.1e-99 367.5 287 67.2
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.7e-76 290.4 313 49.8
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 5.9e-69 265.4 312 45.8
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.0e-68 264.6 312 45.8
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 9.7e-64 248.1 325 45.5
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 1.4e-59 234.2 273 45.8
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 3.9e-57 226.1 354 39.3
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 4.4e-56 222.6 320 42.5
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 9.7e-56 221.5 263 46.8
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.7e-55 220.7 294 41.2
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.2e-55 220.3 349 41.5
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.2e-55 220.3 349 41.5
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 8.2e-55 218.4 364 37.6
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 3.1e-54 216.5 255 43.1
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 4.5e-53 212.6 333 39.0
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 7.7e-53 211.8 288 38.9
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 1.0e-52 211.5 321 40.5
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 1.0e-52 211.5 348 36.8
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 5.0e-52 209.1 368 39.1
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.1e-51 208.0 240 45.4
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 1.5e-51 207.6 288 40.3
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 1.5e-51 207.6 239 46.4
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 2.5e-51 206.8 258 41.5
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 9.4e-51 204.9 289 39.4
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 3.6e-50 203.0 211 51.2
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.7e-50 202.6 340 39.7
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 4.7e-50 202.6 321 38.6
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.8e-49 200.7 335 37.9
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.8e-49 200.7 335 37.9
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 1.8e-49 200.7 350 34.3
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.0e-49 199.5 273 40.3
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 6.7e-49 198.7 369 35.8
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 1.2e-48 198.0 364 35.4
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 1.2e-48 198.0 273 39.6
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.2e-48 198.0 280 40.0
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.3e-48 196.4 182 51.6
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.3e-48 196.4 273 39.6
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 7.5e-48 195.3 392 34.2
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.7e-47 194.1 283 39.2
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 2.2e-47 193.7 282 40.4
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 2.8e-47 193.4 352 34.9
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 6.3e-47 192.2 265 42.3
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.4e-46 191.0 211 43.6
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 3.1e-46 189.9 310 39.0
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 7.0e-46 188.7 135 62.2
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 9.1e-46 188.3 374 34.5
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.1e-46 188.3 235 42.1
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.2e-45 188.0 334 34.1
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.6e-45 187.6 298 36.6
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.0e-45 187.2 235 41.3
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 4.5e-45 186.0 206 47.1
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 4.5e-45 186.0 251 41.4
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 7.7e-45 185.3 258 38.4
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.0e-44 184.9 207 44.9
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 1.9e-43 180.6 239 38.5
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 4.2e-43 179.5 174 48.9
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 5.5e-43 179.1 152 52.0
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 7.2e-43 178.7 273 38.1
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 9.4e-43 178.3 193 49.2
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 1.2e-42 177.9 282 37.2
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 1.2e-42 177.9 291 37.1
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 1.6e-42 177.6 246 41.9
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 1.6e-42 177.6 317 36.3
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.6e-42 177.6 266 35.7
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 3.6e-42 176.4 193 45.6
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.7e-42 176.0 268 36.2
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 4.7e-42 176.0 161 48.4
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 4.7e-42 176.0 317 36.6
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 6.1e-42 175.6 300 37.0
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 6.1e-42 175.6 328 33.5
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 1.0e-41 174.9 168 45.8
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 2.3e-41 173.7 260 35.8
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.3e-41 173.7 134 55.2
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 2.3e-41 173.7 324 35.8
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 3.0e-41 173.3 184 45.7
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 6.8e-41 172.2 278 38.5
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 6.8e-41 172.2 282 37.2
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 8.8e-41 171.8 200 42.5
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 1.2e-40 171.4 277 37.5
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.2e-40 171.4 283 37.8
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 1.5e-40 171.0 314 34.4
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.5e-40 171.0 217 41.5
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 2.0e-40 170.6 260 37.7
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 3.4e-40 169.9 230 36.1
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 3.4e-40 169.9 162 48.8
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 3.4e-40 169.9 330 34.5
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 5.7e-40 169.1 338 33.4
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 5.7e-40 169.1 260 37.7
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 5.7e-40 169.1 255 38.8
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 7.5e-40 168.7 238 37.4
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 7.5e-40 168.7 225 40.9
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 7.5e-40 168.7 316 34.5
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 9.8e-40 168.3 293 34.5
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 9.8e-40 168.3 346 35.3
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.3e-39 167.9 208 41.3
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.3e-39 167.9 167 44.9
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 1.7e-39 167.5 127 58.3
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 1.7e-39 167.5 127 58.3
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 2.2e-39 167.2 251 37.8
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 4.8e-39 166.0 242 36.8
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 6.3e-39 165.6 228 36.4
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 6.3e-39 165.6 218 42.2
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 8.3e-39 165.2 228 40.8
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 1.4e-38 164.5 120 55.8
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.8e-38 164.1 229 37.6
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 2.4e-38 163.7 203 39.9
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 5.4e-38 162.5 280 34.3
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 9.1e-38 161.8 201 42.3
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 9.1e-38 161.8 135 51.1
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 1.6e-37 161.0 320 31.2
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 2.0e-37 160.6 183 43.7
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 3.5e-37 159.8 143 50.3
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 5.9e-37 159.1 183 39.3
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 7.7e-37 158.7 239 36.4
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.0e-36 158.3 154 47.4
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 1.0e-36 158.3 321 32.1
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 2.3e-36 157.1 143 49.7
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 2.3e-36 157.1 143 49.7
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 2.9e-36 156.8 135 50.4
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 2.9e-36 156.8 135 50.4
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 3.8e-36 156.4 155 45.8
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 3.8e-36 156.4 267 37.1
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 8.6e-36 155.2 255 38.0
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 8.6e-36 155.2 272 36.0
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 8.6e-36 155.2 149 46.3
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 1.9e-35 154.1 189 40.2
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.9e-35 154.1 195 37.9
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 1.9e-35 154.1 143 49.0
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 1.9e-35 154.1 107 57.9
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.9e-35 154.1 218 36.7
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 4.2e-35 152.9 211 37.9
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.1e-34 150.6 120 51.7
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 2.1e-34 150.6 266 33.5
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 4.7e-34 149.4 252 32.9
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 3.0e-33 146.7 173 41.0
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 4.0e-33 146.4 110 53.6
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 8.9e-33 145.2 122 51.6
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 4.4e-32 142.9 148 44.6
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 9.8e-32 141.7 207 39.1
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 1.7e-31 141.0 201 35.8
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 3.7e-31 139.8 122 51.6
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 8.3e-31 138.7 119 44.5
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 1.1e-30 138.3 104 52.9
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.1e-30 136.7 108 48.1
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 2.7e-29 133.7 108 48.1
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 3.5e-29 133.3 177 37.9
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.7e-28 131.0 79 65.8
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 1.1e-27 128.3 110 45.5
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 3.3e-27 126.7 189 38.1
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.8e-26 123.6 244 32.0
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 1.8e-25 120.9 108 46.3
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 4.0e-25 119.8 251 34.7
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 4.4e-24 116.3 319 26.6
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 4.9e-23 112.8 103 47.6
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 8.3e-23 112.1 131 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 1.1e-22 111.7 101 44.6
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.4e-22 111.3 93 46.2
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 5.4e-22 109.4 215 34.0
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 9.2e-22 108.6 107 41.1
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.8e-21 105.5 155 29.7
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.0e-20 105.1 134 35.8
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 2.5e-19 100.5 98 39.8
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 8.0e-18 95.5 94 41.5
Ah.08g221090 Amaranthus hybridus HOM05D003809 ORTHO05D003935 1.3e-15 88.2 178 29.2
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 2.4e-14 84.0 104 29.8
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 1.1e-11 75.1 105 37.1
MCO03G441 Micromonas commoda HOM05D022748 ORTHO05D003935 2.5e-11 73.9 76 36.8
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 9.5e-11 72.0 136 25.0
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 2.8e-10 70.5 142 22.5
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.1e-09 68.6 138 37.0
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.8e-09 67.8 148 24.3
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 1.2e-08 65.1 131 24.4
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.2e-08 65.1 42 57.1
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 4.4e-08 63.2 133 27.1
MCO16G448 Micromonas commoda HOM05D003809 ORTHO05D003935 4.4e-08 63.2 178 21.3
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 7.5e-08 62.4 153 22.2
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.9e-07 60.5 85 30.6
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 6.4e-07 59.3 81 30.9
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 8.3e-07 58.9 124 22.6
Cre12.g492750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D138784 2.4e-06 57.4 65 30.8
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 2.4e-06 57.4 224 21.9
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 7.1e-06 55.8 81 29.6
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 7.1e-06 55.8 80 27.5
Cre09.g394547 Chlamydomonas reinhardtii HOM05D020634 ORTHO05D003935 9.2e-06 55.5 65 30.8
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 9.2e-06 55.5 211 20.9


User provided reference genes

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