Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.2e-120 435.6 217 100.0
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 8.7e-37 157.9 207 46.9
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.6e-36 155.2 213 46.9
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 1.1e-28 131.0 210 42.9
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 2.1e-27 126.7 213 42.7
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 2.4e-26 123.2 198 40.9
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 3.4e-25 119.4 214 40.2
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 7.6e-25 118.2 225 37.3
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 2.9e-24 116.3 208 41.3
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 2.9e-24 116.3 241 35.3
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.1e-23 114.4 234 36.8
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 7.2e-23 111.7 206 38.3
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 7.2e-23 111.7 206 38.3
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 2.1e-22 110.2 206 38.3
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 3.6e-22 109.4 213 37.6
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.7e-21 105.1 225 37.8
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 8.7e-21 104.8 227 34.8
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.5e-20 104.0 214 34.6
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-20 103.6 219 38.4
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 3.3e-20 102.8 193 38.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.3e-20 102.8 218 37.6
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.3e-20 102.4 246 35.4
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 9.7e-20 101.3 167 42.5
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 9.7e-20 101.3 219 35.6
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-19 100.9 213 35.7
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.3e-19 100.9 203 37.9
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 1.6e-19 100.5 230 34.3
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.6e-19 100.5 222 35.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 8.2e-19 98.2 205 37.6
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 1.8e-18 97.1 218 36.7
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 4.1e-18 95.9 197 34.5
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 5.3e-18 95.5 215 34.9
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 6.9e-18 95.1 241 34.0
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.6e-17 93.2 252 32.9
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 2.2e-16 90.1 195 32.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.9e-16 89.7 227 35.2
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 3.8e-16 89.4 244 33.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 5.0e-16 89.0 220 32.7
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 6.5e-16 88.6 210 32.4
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 1.4e-15 87.4 197 34.5
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 1.9e-15 87.0 163 41.1
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 3.2e-15 86.3 199 34.7
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.4e-15 84.7 271 29.9
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.2e-14 84.3 211 32.7
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.6e-14 84.0 214 34.1
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 4.6e-14 82.4 209 36.8
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 4.6e-14 82.4 210 32.4
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 6.1e-14 82.0 201 32.3
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 7.9e-14 81.6 239 30.5
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 7.9e-14 81.6 241 30.3
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 7.9e-14 81.6 223 30.5
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.8e-13 80.5 238 33.2
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 2.3e-13 80.1 224 31.2
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 3.0e-13 79.7 223 30.0
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 3.9e-13 79.3 216 29.6
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 6.7e-13 78.6 228 31.1
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.1e-12 77.8 201 32.3
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.6e-12 76.6 236 30.9
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 5.7e-12 75.5 235 28.5
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 5.7e-12 75.5 201 32.3
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 1.3e-11 74.3 225 30.7
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.3e-11 74.3 225 30.7
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 1.7e-11 73.9 228 31.1
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 1.7e-11 73.9 228 31.1
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 2.2e-11 73.6 230 30.9
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.7e-11 72.8 213 31.0
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 6.3e-11 72.0 193 31.6
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.4e-10 70.9 58 55.2
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.4e-10 70.1 92 41.3
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 5.3e-10 68.9 198 29.8
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 5.3e-10 68.9 198 30.8
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.8e-08 62.8 150 32.0
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.8e-08 62.8 198 34.8
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 5.0e-08 62.4 128 37.5
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 8.5e-08 61.6 206 34.0
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 8.5e-08 61.6 211 26.5
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 3.2e-07 59.7 214 31.3
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 4.2e-07 59.3 56 55.4
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.2e-07 59.3 56 55.4
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.6e-06 56.2 217 27.6
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 4.7e-06 55.8 203 34.5
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 6.1e-06 55.5 192 27.6


User provided reference genes

Program Settings