Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.1e-131 473.4 246 100.0
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.2e-80 302.4 192 85.9
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.7e-79 299.3 190 82.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.3e-78 296.2 190 81.6
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 8.8e-78 294.3 193 82.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 8.3e-76 287.7 195 81.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.1e-75 287.3 192 81.2
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 5.4e-75 285.0 191 78.5
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.6e-74 283.5 195 80.0
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.3e-73 280.4 196 79.1
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.3e-73 280.4 196 79.1
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.2e-73 279.6 191 80.6
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 9.4e-72 274.2 190 78.9
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 9.4e-72 274.2 191 75.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.6e-71 273.5 198 77.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.1e-71 273.1 197 79.7
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.1e-71 273.1 194 79.4
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.7e-71 271.9 197 77.7
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 8.0e-71 271.2 197 76.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.4e-70 270.4 198 78.3
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.4e-70 270.4 199 77.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.8e-70 270.0 196 78.1
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 4.0e-70 268.9 178 79.8
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 6.8e-70 268.1 190 77.4
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.6e-69 266.2 198 75.8
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.6e-69 266.2 198 75.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 3.4e-69 265.8 194 76.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.4e-69 265.4 198 75.8
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.4e-69 265.4 197 74.6
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.7e-69 265.0 198 75.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.3e-68 263.8 190 76.8
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.7e-68 263.5 196 76.0
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.9e-68 261.9 191 77.0
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.4e-67 260.4 198 74.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.8e-67 260.0 193 76.2
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.8e-67 260.0 195 73.8
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 2.4e-67 259.6 196 77.6
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.4e-67 259.6 200 75.0
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.4e-67 259.6 194 75.3
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 3.1e-67 259.2 200 74.5
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.4e-67 258.5 198 74.7
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.0e-67 258.1 194 73.2
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 9.2e-67 257.7 191 75.9
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.6e-66 256.9 193 75.1
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.6e-66 256.9 200 75.0
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.5e-66 255.8 198 73.7
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 4.5e-66 255.4 200 73.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 5.9e-66 255.0 191 74.9
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.7e-66 254.6 198 72.7
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 7.7e-66 254.6 198 72.7
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.0e-65 254.2 198 72.7
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.3e-65 253.8 197 76.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.3e-65 253.8 199 71.9
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.7e-65 253.4 191 70.7
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-65 253.4 192 76.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-65 253.4 192 76.6
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.3e-65 253.1 195 73.8
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.0e-65 251.9 199 74.4
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.1e-64 250.8 199 72.4
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.1e-64 250.8 190 75.3
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.1e-64 250.8 198 72.2
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.5e-64 250.4 195 74.4
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.5e-64 250.4 198 72.2
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 7.3e-64 248.1 196 73.5
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 9.5e-64 247.7 210 70.5
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.5e-64 247.7 195 73.8
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.2e-63 247.3 190 74.2
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.6e-63 246.9 196 74.0
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 6.1e-63 245.0 195 72.8
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.8e-62 243.4 191 71.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.3e-62 243.0 195 72.8
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.0e-62 242.7 195 73.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 3.0e-62 242.7 194 71.6
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 8.9e-62 241.1 194 73.2
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.2e-61 240.7 193 72.0
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.0e-61 240.0 192 72.4
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 2.6e-61 239.6 201 69.7
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 3.4e-61 239.2 193 71.5
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 3.4e-61 239.2 196 69.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 4.4e-61 238.8 188 72.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 9.8e-61 237.7 198 73.7
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 9.8e-61 237.7 198 73.7
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-61 237.7 197 70.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 9.8e-61 237.7 192 73.4
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-60 237.3 195 68.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.3e-60 237.3 197 68.0
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.7e-60 236.9 187 74.3
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.2e-60 236.5 192 72.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.2e-60 236.5 192 72.4
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.9e-60 236.1 194 71.1
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.9e-60 236.1 194 71.1
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.9e-60 236.1 194 71.1
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.9e-60 236.1 194 71.1
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.9e-60 236.1 192 71.9
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.9e-60 236.1 191 70.7
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-59 234.2 190 70.5
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-59 234.2 194 71.1
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.1e-59 234.2 194 70.6
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.1e-59 234.2 190 70.5
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.1e-59 234.2 194 71.1
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.4e-59 233.8 193 71.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.8e-59 233.4 190 70.5
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.8e-59 233.4 192 72.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.2e-59 232.6 195 70.8
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 4.1e-59 232.3 194 71.1
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 5.4e-59 231.9 190 70.0
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 7.0e-59 231.5 190 71.1
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 7.0e-59 231.5 156 79.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 2.0e-58 229.9 196 67.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 3.5e-58 229.2 188 71.3
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.6e-58 228.8 195 69.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 7.8e-58 228.0 171 75.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.9e-57 225.7 190 70.0
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 8.6e-57 224.6 196 69.4
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.1e-56 224.2 195 70.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.1e-56 224.2 189 70.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.2e-55 220.7 196 67.3
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.7e-52 210.3 117 88.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.7e-52 210.3 220 58.6
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.4e-51 207.2 136 80.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 7.8e-50 201.4 113 89.4
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 7.3e-48 194.9 151 75.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 6.2e-47 191.8 141 73.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.0e-46 189.1 204 55.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 8.3e-44 181.4 116 78.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-43 180.6 210 55.7
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-42 176.8 122 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 6.6e-41 171.8 134 68.7
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 5.1e-33 145.6 82 87.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 6.6e-33 145.2 91 79.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.5e-32 143.3 89 79.8
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 3.0e-25 119.8 166 51.2
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.9e-24 117.1 82 68.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.6e-24 115.5 113 61.1
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 4.0e-22 109.4 81 66.7
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-20 104.4 80 73.8
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.8e-14 84.0 77 55.8
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.8e-14 84.0 77 55.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.6e-13 80.1 75 54.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-08 64.7 43 72.1
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.3e-08 62.8 47 68.1
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.8e-07 60.1 60 48.3
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 3.7e-07 59.7 99 43.4
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 4.8e-07 59.3 99 43.4
AagrBONN_evm.TU.Sc2ySwM_117.2075 Anthoceros agrestis HOM05D041339 ORTHO05D031170 9.0e-06 55.1 99 37.4


User provided reference genes

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