Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 2.1e-215 752.3 442 100.0
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.5e-165 586.6 406 84.2
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.7e-153 544.7 331 86.4
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 4.4e-152 542.0 409 84.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 9.1e-150 534.3 332 84.6
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.8e-148 528.9 332 83.7
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.5e-147 526.9 403 79.7
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 6.1e-146 521.5 410 82.9
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.0e-146 521.2 417 81.8
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 3.0e-145 519.2 332 81.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 6.8e-145 518.1 331 82.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 4.8e-143 511.9 329 80.9
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.1e-142 510.8 401 75.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.1e-142 510.8 329 82.7
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.4e-142 509.6 332 81.0
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 3.1e-142 509.2 330 82.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 5.3e-142 508.4 407 79.9
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 7.0e-142 508.1 334 81.4
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.6e-141 506.9 369 82.9
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.6e-141 506.9 333 81.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.7e-141 506.1 447 74.7
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.7e-141 506.1 342 78.9
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 5.9e-141 505.0 337 80.7
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 2.9e-140 502.7 403 79.4
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 5.0e-140 501.9 334 79.3
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.1e-139 500.7 330 80.9
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.5e-139 500.4 387 76.7
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.9e-139 500.0 332 79.8
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.9e-139 500.0 428 68.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 9.4e-139 497.7 404 75.0
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 9.4e-139 497.7 422 79.1
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.3e-137 493.0 336 79.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 3.0e-137 492.7 415 75.4
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 2.6e-136 489.6 332 78.3
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 3.4e-136 489.2 329 78.4
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 3.4e-136 489.2 407 74.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 4.4e-136 488.8 380 78.2
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.7e-135 486.9 337 77.7
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.2e-135 486.5 430 71.2
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 6.3e-135 485.0 403 75.4
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.1e-134 482.6 329 79.6
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 3.1e-134 482.6 355 74.1
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 7.0e-134 481.5 329 79.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.6e-133 480.3 339 74.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 5.9e-133 478.4 329 78.1
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.9e-133 478.4 307 81.1
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 7.7e-133 478.0 400 76.0
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.0e-132 477.6 329 75.7
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.0e-132 475.3 340 72.4
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 5.0e-132 475.3 306 80.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.1e-131 474.2 339 73.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.1e-131 474.2 331 74.6
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.9e-131 473.4 305 80.7
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.9e-131 473.4 326 77.6
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.9e-131 473.4 319 79.3
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.3e-131 472.6 330 75.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 3.3e-131 472.6 338 75.1
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.1e-130 469.9 330 74.8
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.8e-130 469.5 327 75.2
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.6e-130 469.2 403 71.2
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 4.0e-129 465.7 332 72.9
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.8e-129 464.9 374 74.1
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.2e-128 464.2 299 82.9
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.2e-128 464.2 298 84.9
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.2e-128 464.2 401 71.8
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 8.3e-127 458.0 296 82.4
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.2e-126 456.1 374 71.1
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 4.1e-126 455.7 301 81.1
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.0e-124 451.1 408 72.3
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 6.6e-124 448.4 317 74.8
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.5e-123 446.4 340 71.2
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 9.5e-123 444.5 387 64.3
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.6e-122 443.7 347 70.3
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.8e-121 438.3 291 80.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 4.4e-120 435.6 325 72.0
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 5.8e-120 435.3 410 65.9
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.8e-120 435.3 278 83.1
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 7.5e-120 434.9 324 72.2
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 7.5e-120 434.9 278 83.5
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 8.3e-119 431.4 348 66.7
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 5.4e-118 428.7 299 79.3
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.6e-117 425.6 332 68.4
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 5.0e-116 422.2 300 74.7
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 2.5e-115 419.9 407 65.6
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 7.3e-115 418.3 437 59.3
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.1e-113 412.9 348 66.4
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.1e-113 412.9 348 66.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 9.8e-112 407.9 278 78.1
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.3e-111 407.5 579 47.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 2.9e-111 406.4 323 67.8
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.1e-110 404.4 290 72.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.9e-110 403.7 411 61.6
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.1e-110 402.5 345 66.4
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.7e-109 399.8 330 67.6
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.3e-108 396.7 330 67.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 8.6e-108 394.8 259 82.2
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.5e-107 394.0 300 70.3
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 4.3e-107 392.5 322 66.1
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.5e-104 384.0 346 62.7
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-103 380.6 342 62.0
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.7e-103 380.6 238 83.6
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 2.2e-103 380.2 329 64.1
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 2.2e-103 380.2 329 64.1
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 3.7e-103 379.4 340 62.4
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 5.8e-96 355.5 284 71.8
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 5.8e-96 355.5 250 78.4
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.9e-95 353.2 328 57.6
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 3.2e-94 349.7 252 74.2
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.6e-90 337.4 269 68.4
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.4e-89 333.6 292 57.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 9.9e-88 328.2 293 58.0
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.1e-86 324.7 348 54.6
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.5e-83 314.3 341 54.0
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.0e-71 275.0 346 46.5
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 3.9e-68 263.1 341 46.9
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 6.7e-68 262.3 224 59.8
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.4e-65 254.6 310 53.9
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.1e-65 253.1 213 62.9
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.3e-65 252.7 206 59.2
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 4.3e-59 233.0 361 41.0
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.0e-52 211.8 304 43.1
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.3e-44 184.1 291 39.5
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 2.3e-44 184.1 135 74.1
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 6.5e-31 139.4 99 78.8
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 3.2e-30 137.1 99 77.8
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 3.2e-30 137.1 99 77.8
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 4.0e-28 130.2 93 77.4
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.7e-27 126.3 71 85.9
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.1e-17 94.0 84 58.3
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 5.0e-15 86.7 256 27.3
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 7.2e-14 82.8 95 52.6
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 7.2e-14 82.8 95 52.6
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.1e-13 81.3 62 67.7
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 1.0e-12 79.0 332 26.5
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 7.5e-11 72.8 109 45.9
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 8.3e-10 69.3 96 49.0
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 7.0e-09 66.2 100 39.0
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.5e-06 58.5 50 70.0
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 2.5e-06 57.8 36 75.0


User provided reference genes

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