Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 6.5e-229 797.0 380 100.0
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 6.1e-211 737.3 378 91.0
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 8.8e-210 733.4 380 91.6
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 4.1e-207 724.5 378 89.7
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.8e-202 709.1 378 87.3
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 4.4e-201 704.5 378 87.3
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.2e-200 702.2 378 85.7
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 8.2e-200 700.3 376 85.1
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.5e-198 694.9 376 85.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 7.7e-198 693.7 378 85.7
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 2.9e-197 691.8 377 84.4
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 8.5e-197 690.3 378 84.7
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 7.2e-196 687.2 378 83.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 6.1e-195 684.1 377 83.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 8.8e-194 680.2 379 83.6
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.5e-193 679.5 379 82.8
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 3.4e-193 678.3 378 83.1
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 4.4e-193 677.9 378 83.1
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.2e-192 675.6 378 82.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 4.8e-192 674.5 373 83.1
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.4e-191 672.2 378 82.3
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 2.3e-189 665.6 374 80.2
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.9e-188 662.5 374 79.9
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.2e-187 659.8 382 78.3
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 2.8e-187 658.7 384 84.1
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 3.6e-187 658.3 377 82.5
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 3.6e-187 658.3 378 79.9
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 8.0e-187 657.1 379 81.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.0e-186 656.8 378 81.0
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 1.4e-186 656.4 387 79.3
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.8e-186 656.0 382 82.2
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 5.2e-186 654.4 382 79.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 6.8e-186 654.1 331 93.7
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.8e-184 648.7 381 79.0
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.8e-184 648.7 378 79.6
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.1e-183 646.7 375 80.0
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.4e-183 645.6 377 80.4
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.1e-183 645.2 376 79.8
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.5e-182 641.3 417 74.1
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.9e-181 638.6 386 77.7
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.5e-180 636.3 374 78.9
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 2.1e-179 632.5 380 77.1
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.6e-179 631.7 372 76.3
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 3.6e-179 631.7 372 76.3
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 3.6e-179 631.7 372 76.3
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 4.7e-179 631.3 372 76.6
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 8.0e-179 630.6 372 76.6
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.8e-178 629.4 372 76.3
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.8e-178 629.4 375 75.5
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 6.8e-178 627.5 378 78.3
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 2.6e-177 625.5 372 76.6
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 4.4e-177 624.8 372 76.3
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 4.4e-177 624.8 372 76.3
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 4.4e-177 624.8 372 76.3
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 7.5e-177 624.0 372 76.6
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 7.5e-177 624.0 339 84.4
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 9.8e-177 623.6 378 77.8
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 3.7e-176 621.7 373 76.9
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.4e-176 620.9 378 77.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 3.2e-175 618.6 378 77.0
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 4.1e-175 618.2 375 74.4
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 5.4e-175 617.8 373 76.9
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 7.0e-175 617.5 373 76.4
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.2e-174 616.7 373 76.4
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 4.6e-174 614.8 374 75.7
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.0e-173 613.6 368 77.2
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.0e-173 612.1 356 80.1
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.9e-173 611.7 379 76.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.2e-171 606.7 393 73.5
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 6.8e-170 600.9 387 74.4
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.7e-168 595.1 383 74.7
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 2.4e-167 592.4 378 73.8
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 2.4e-167 592.4 376 74.7
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 7.0e-167 590.9 339 80.2
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.6e-166 589.7 367 74.1
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 6.0e-166 587.8 360 76.4
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.3e-165 586.6 368 75.3
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.7e-165 586.3 411 67.9
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 9.5e-164 580.5 378 72.5
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 3.1e-162 575.5 378 73.0
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.0e-161 572.8 374 71.9
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 2.6e-161 572.4 335 78.2
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 5.8e-161 571.2 383 70.0
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.9e-160 568.9 378 71.2
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.1e-159 567.0 379 72.8
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 8.6e-157 557.4 368 69.8
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.1e-156 557.0 357 77.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.1e-156 557.0 280 90.7
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.5e-156 556.6 366 71.3
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 4.7e-155 551.6 359 72.4
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.2e-155 551.2 321 78.8
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 6.2e-155 551.2 375 69.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 4.0e-154 548.5 375 69.3
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 4.4e-153 545.0 369 70.2
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 4.4e-153 545.0 375 68.5
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.8e-153 544.7 378 69.8
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 7.6e-153 544.3 375 68.8
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 9.9e-153 543.9 335 74.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 2.9e-152 542.3 375 68.3
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 4.9e-152 541.6 375 68.0
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.8e-150 534.3 373 67.3
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 7.8e-150 534.3 372 68.3
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 7.8e-150 534.3 375 66.9
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 8.7e-149 530.8 366 69.1
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.6e-147 525.4 377 66.3
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.6e-147 525.4 377 66.3
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.7e-144 516.5 378 66.4
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.1e-142 509.6 378 68.0
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 3.5e-142 508.8 375 62.4
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 4.0e-138 495.4 375 63.2
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 2.2e-136 489.6 252 87.7
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 7.1e-135 484.6 256 85.2
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.3e-128 463.8 365 59.7
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 1.0e-125 454.1 280 74.6
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.8e-125 453.4 385 54.3
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 6.7e-125 451.4 252 79.0
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 4.5e-121 438.7 385 53.0
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.0e-120 437.6 374 56.1
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.3e-116 422.5 380 53.2
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 5.5e-111 405.2 224 82.1
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 4.6e-110 402.1 306 65.4
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.3e-108 396.0 375 54.1
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.0e-96 357.8 307 57.3
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 6.7e-85 318.5 538 36.2
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.2e-83 313.5 220 69.1
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.5e-79 300.1 213 70.9
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 7.2e-79 298.5 220 68.2
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.0e-72 278.1 274 53.6
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.0e-72 275.8 147 85.0
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.1e-70 270.4 153 86.9
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.1e-70 270.4 144 85.4
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 5.4e-66 255.8 367 39.0
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 5.0e-64 249.2 146 79.5
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 6.4e-59 232.3 133 78.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 7.8e-49 198.7 154 59.1
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.6e-46 189.9 111 73.9
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.6e-41 174.5 286 34.6
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.2e-33 148.3 92 71.7
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.8e-29 134.4 285 29.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.5e-28 131.3 146 52.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 3.6e-22 110.2 59 81.4
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.8e-21 107.8 66 71.2
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 4.0e-21 106.7 57 78.9
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-15 88.6 51 66.7
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 4.3e-15 86.7 78 53.8
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.2e-12 78.6 48 77.1
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.0e-12 77.8 57 63.2
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 4.6e-09 66.6 37 73.0


User provided reference genes

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