Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1921.4 963 100.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1623.2 960 83.8
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1586.6 960 82.8
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1584.3 959 81.3
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1577.0 962 82.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1571.6 959 80.8
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1570.4 959 81.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1567.0 959 80.4
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1565.1 960 81.1
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1562.0 963 81.2
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1557.3 960 80.0
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1554.3 960 80.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1545.8 960 80.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 963 78.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1518.1 961 79.0
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1517.3 960 78.5
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1513.8 1050 74.0
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1510.4 960 78.6
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1510.0 959 77.8
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1509.6 961 78.3
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1508.8 962 78.5
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1508.4 963 77.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1498.8 959 77.1
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1495.3 960 77.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1492.2 1025 73.8
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1488.8 963 76.4
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 960 76.9
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 960 76.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 960 77.1
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1469.9 960 76.1
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1469.1 960 76.0
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1468.8 967 75.3
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1468.0 959 76.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1461.0 960 76.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1458.7 962 75.9
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1457.2 961 74.9
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1455.7 1046 70.8
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 979 74.7
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1454.1 960 75.5
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1452.2 961 75.7
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1451.4 979 74.5
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 960 75.5
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 967 74.7
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 967 74.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 960 75.1
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 964 76.0
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 963 73.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1444.1 967 75.9
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1443.3 960 75.4
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1442.9 1036 72.2
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1437.6 960 75.2
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1436.8 959 74.7
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1435.6 960 72.9
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1434.9 960 75.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 961 74.5
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 961 72.8
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1430.6 963 73.0
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1429.1 960 72.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1427.5 959 73.4
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 959 73.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1422.5 864 83.0
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1422.1 966 73.9
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1422.1 960 75.6
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1419.4 960 73.4
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1419.4 961 74.4
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1419.1 960 72.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1417.5 961 72.0
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1415.2 959 73.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1404.8 960 73.6
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1394.8 961 71.1
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1394.0 952 71.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1392.5 961 71.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1391.3 960 72.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1390.2 960 72.7
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1384.0 854 81.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1381.3 962 70.9
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1381.3 845 80.7
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1377.8 961 70.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1368.6 960 71.7
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1367.4 960 72.0
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1358.2 883 77.0
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1351.3 970 71.4
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1350.9 961 70.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1343.9 1001 67.4
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1342.8 964 70.1
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1342.4 964 69.4
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1337.4 966 69.3
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1320.1 800 82.9
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1300.4 968 68.5
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1294.6 852 75.1
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1246.1 955 66.3
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1183.3 790 73.8
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1172.5 960 64.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 8.5e-294 1013.8 982 54.6
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.8e-284 982.2 695 71.9
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.8e-283 979.5 965 52.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 2.7e-279 965.7 633 76.5
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.0e-262 910.6 969 50.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 6.8e-251 871.3 662 67.1
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 2.8e-244 849.4 517 77.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.2e-242 844.0 518 79.5
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.6e-242 842.8 683 63.5
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 9.3e-232 807.7 855 54.5
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 3.4e-218 762.7 470 76.8
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-218 762.7 450 79.6
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.9e-217 759.6 450 79.1
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.6e-215 753.8 453 78.8
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.1e-213 747.7 496 72.2
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 8.2e-212 741.5 465 76.1
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 6.5e-209 731.9 450 76.2
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.4e-206 724.2 455 75.6
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 3.9e-206 722.6 450 78.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 6.7e-198 695.3 450 74.4
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.3e-197 693.0 456 72.8
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 7.7e-194 681.8 486 69.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.8e-180 636.0 612 55.2
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 5.2e-174 615.9 458 67.2
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.2e-173 614.8 450 68.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.3e-169 600.5 450 65.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 5.6e-160 569.3 366 75.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 4.1e-155 553.1 366 73.0
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 9.5e-144 515.4 439 62.2
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 8.9e-142 508.8 303 81.8
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 5.4e-139 499.6 333 73.6
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.6e-135 486.9 357 68.6
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.1e-127 461.1 267 81.6
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 5.3e-126 456.4 981 32.2
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 7.1e-123 446.0 242 88.8
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 3.1e-118 430.6 286 75.2
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.8e-113 414.8 271 76.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.2e-106 392.1 266 75.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.6e-106 391.7 237 82.3
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.3e-105 387.9 216 86.6
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.8e-102 378.3 238 77.7
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 4.4e-80 303.9 239 65.7
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 5.0e-76 290.4 156 86.5
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 4.7e-58 230.7 182 73.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.4e-46 192.6 156 63.5
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.4e-46 192.6 155 60.0
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.3e-44 186.0 121 70.2
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 6.6e-44 183.7 239 42.7
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 3.6e-42 177.9 179 54.7
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 7.5e-32 143.7 137 54.0
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 2.9e-31 141.7 137 53.3
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 7.1e-30 137.1 115 60.9
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 6.0e-29 134.0 111 64.9
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 6.6e-28 130.6 96 66.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.5e-27 129.4 85 65.9
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.9e-27 129.0 84 69.0
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.8e-25 122.5 96 63.5
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 4.1e-22 111.3 55 90.9
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 2.3e-20 105.5 62 82.3
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 3.6e-18 98.2 57 75.4
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.1e-17 96.7 58 74.1
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 8.9e-17 93.6 56 73.2
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 8.9e-17 93.6 75 64.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.4e-14 84.3 74 56.8
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.1e-10 72.4 74 50.0
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.4e-09 68.9 41 73.2
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 2.0e-08 65.9 44 63.6
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 4.5e-08 64.7 89 41.6
MBI03_g26335_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D244274 1.1e-06 60.1 57 63.2
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.9e-06 59.3 63 58.7
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.9e-06 59.3 70 48.6
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 3.2e-06 58.5 39 71.8


User provided reference genes

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