Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 0.0e+00 1280.4 803 100.0
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.5e-251 873.2 783 77.7
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 4.0e-236 822.0 800 67.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 7.8e-224 781.2 798 69.4
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.7e-218 763.5 786 69.8
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.4e-218 761.5 829 64.3
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 2.4e-217 759.6 801 68.2
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 4.9e-210 735.3 801 63.4
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.7e-208 729.6 797 63.4
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.9e-206 723.4 782 66.0
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.8e-202 709.1 801 63.3
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.7e-200 703.0 791 64.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.3e-199 700.7 797 59.8
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.3e-199 700.7 794 65.1
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.1e-198 697.6 800 63.6
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.9e-198 696.8 796 61.7
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.5e-198 696.4 806 63.6
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.1e-196 691.0 805 61.9
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.4e-196 689.9 791 61.2
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 3.1e-196 689.5 796 58.8
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 3.1e-196 689.5 788 65.2
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.0e-196 689.1 804 60.0
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.1e-193 681.0 804 61.3
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 7.8e-192 674.9 801 63.7
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 8.7e-191 671.4 797 64.1
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.6e-189 667.2 797 61.4
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 6.2e-189 665.2 798 59.4
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 6.2e-189 665.2 802 57.5
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 8.1e-189 664.8 791 62.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 2.4e-188 663.3 807 54.6
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 3.1e-188 662.9 797 58.5
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 9.0e-188 661.4 784 63.6
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 9.0e-188 661.4 855 59.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.2e-187 661.0 783 64.1
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.2e-187 661.0 811 58.2
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.8e-186 656.0 799 60.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 6.0e-184 648.7 797 59.8
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 7.9e-184 648.3 786 61.2
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 7.9e-184 648.3 805 58.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.8e-183 647.1 795 51.6
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.0e-183 646.4 797 59.6
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 6.7e-183 645.2 799 56.9
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.6e-181 640.6 804 58.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.1e-181 640.2 797 61.6
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.8e-181 639.0 803 60.0
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 2.6e-179 633.3 798 56.0
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 9.9e-179 631.3 804 59.2
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.7e-178 630.6 798 62.4
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.4e-177 627.5 802 57.7
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-177 627.5 803 57.3
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.1e-176 623.6 798 59.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.0e-175 621.3 801 59.4
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 9.6e-174 614.8 808 59.8
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 3.7e-173 612.8 800 59.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.8e-173 612.5 786 57.3
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 4.8e-173 612.5 805 58.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 6.2e-173 612.1 792 59.5
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-172 611.3 831 58.6
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.8e-172 610.5 786 59.2
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 5.3e-172 609.0 798 56.4
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.5e-171 607.4 784 59.7
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.2e-170 603.6 772 56.5
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 3.8e-170 602.8 799 58.2
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 4.9e-170 602.4 825 56.6
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.5e-170 602.1 798 56.3
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 6.5e-170 602.1 786 61.3
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.3e-167 594.3 802 57.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.3e-166 589.7 799 57.4
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.7e-166 588.2 797 56.2
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.6e-165 587.4 775 60.0
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.1e-165 587.0 736 59.0
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.8e-165 586.6 804 57.8
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 5.0e-162 575.9 811 56.6
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 8.5e-162 575.1 798 56.5
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.1e-161 574.7 787 56.4
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 4.6e-160 569.3 714 58.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 3.9e-159 566.2 807 53.4
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 5.1e-159 565.8 768 51.2
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.6e-157 560.8 787 58.8
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.8e-157 560.1 808 50.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-156 557.8 794 56.9
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 5.9e-155 552.4 795 54.3
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 2.2e-154 550.4 797 53.7
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 3.9e-151 539.7 809 56.4
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 4.8e-149 532.7 797 50.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.2e-146 523.9 817 54.3
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 6.5e-146 522.3 803 54.9
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.4e-145 521.2 737 50.2
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 6.1e-144 515.8 744 49.3
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 5.3e-140 502.7 798 54.8
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 7.7e-139 498.8 781 49.0
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.2e-138 497.3 798 51.9
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 6.5e-138 495.7 801 49.3
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.5e-137 493.8 798 52.0
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 5.5e-137 492.7 807 49.2
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.2e-136 491.5 807 49.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.6e-136 490.0 797 50.3
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.8e-135 487.6 806 50.6
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.2e-134 485.0 800 51.6
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.3e-133 481.5 805 48.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.4e-132 478.0 805 49.7
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.8e-130 469.9 800 52.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.6e-128 464.5 801 46.8
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.6e-128 464.5 789 48.7
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.7e-128 463.8 803 47.1
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.7e-128 463.8 803 47.1
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.3e-127 460.7 791 52.6
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.3e-127 460.7 784 52.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.5e-126 458.0 822 48.2
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.5e-126 458.0 705 51.3
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.6e-126 457.2 736 51.0
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.7e-125 453.4 804 49.9
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.8e-124 451.1 811 52.0
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 5.4e-124 449.5 736 50.4
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.7e-118 429.5 557 61.2
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.7e-115 420.6 804 45.8
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.1e-105 388.7 801 45.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.2e-102 378.6 851 43.4
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.4e-95 355.1 336 65.2
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 6.8e-95 352.8 289 66.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.2e-93 347.8 845 41.2
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 9.2e-92 342.4 794 45.0
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.2e-91 342.0 835 43.1
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 9.2e-84 315.8 598 47.5
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 2.3e-66 258.1 248 64.5
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-60 238.8 236 63.6
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.5e-60 236.9 799 36.8
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 9.3e-60 236.1 253 55.7
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.8e-56 224.6 225 61.8
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.4e-54 217.6 188 68.1
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.2e-48 198.4 315 44.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.2e-46 192.6 369 44.2
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-43 181.4 295 44.4
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 5.1e-42 177.2 164 61.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.9e-36 158.7 131 70.2
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.7e-24 119.0 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 4.8e-24 117.5 73 78.1
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 7.2e-20 103.6 126 45.2
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 9.1e-15 86.7 106 41.5
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.7e-14 83.6 137 42.3
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.7e-13 82.4 133 39.1
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.2e-13 82.0 73 56.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 3.2e-12 78.2 106 37.7
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 1.4e-10 72.8 204 30.9
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.8e-10 72.4 146 32.9
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 3.0e-10 71.6 721 25.1
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.7e-09 67.4 119 42.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.8e-09 66.6 55 63.6
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.9e-06 57.4 134 37.3


User provided reference genes

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