Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24229 Davidia involucrata HOM05D003620 ORTHO05D004261 4.0e-63 244.6 124 100.0
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 4.6e-43 177.9 154 63.6
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.1e-41 173.3 109 77.1
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 3.3e-41 171.8 104 77.9
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 7.4e-41 170.6 98 81.6
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 9.7e-41 170.2 99 79.8
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 2.2e-40 169.1 106 75.5
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 4.8e-40 167.9 103 78.6
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 6.3e-40 167.5 96 79.2
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 2.4e-39 165.6 151 59.6
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 6.9e-39 164.1 156 57.1
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 6.9e-39 164.1 126 68.3
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 9.1e-39 163.7 146 64.4
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 9.1e-39 163.7 98 79.6
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 1.2e-38 163.3 107 72.9
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 1.5e-38 162.9 104 76.0
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 1.5e-38 162.9 149 56.4
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.0e-38 162.5 148 60.1
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 2.0e-38 162.5 98 77.6
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 2.6e-38 162.2 106 71.7
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 2.6e-38 162.2 107 72.9
Sp7g23980 Schrenkiella parvula HOM05D003620 ORTHO05D004261 2.6e-38 162.2 96 80.2
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 3.4e-38 161.8 144 61.8
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.4e-38 161.8 98 77.6
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 3.4e-38 161.8 111 72.1
arahy.Tifrunner.gnm1.ann1.4105RR Arachis hypogaea HOM05D003620 ORTHO05D004261 4.5e-38 161.4 98 75.5
arahy.Tifrunner.gnm1.ann1.XM8XEN Arachis hypogaea HOM05D003620 ORTHO05D004261 4.5e-38 161.4 98 75.5
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 4.5e-38 161.4 154 57.8
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 7.7e-38 160.6 94 78.7
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.0e-37 160.2 98 77.6
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 1.0e-37 160.2 96 79.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.0e-37 160.2 98 77.6
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.0e-37 160.2 98 77.6
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 1.0e-37 160.2 96 79.2
Oeu047370.1 Olea europaea HOM05D003620 ORTHO05D004261 1.0e-37 160.2 150 58.7
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.0e-37 160.2 106 71.7
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.3e-37 159.8 103 73.8
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 1.3e-37 159.8 104 72.1
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 1.7e-37 159.5 145 56.6
Migut.B00642 Erythranthe guttata HOM05D003620 ORTHO05D004261 1.7e-37 159.5 145 58.6
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 1.7e-37 159.5 106 71.7
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 2.9e-37 158.7 149 58.4
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.9e-37 158.7 102 71.6
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 2.9e-37 158.7 107 72.0
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 3.8e-37 158.3 105 67.6
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 3.8e-37 158.3 103 72.8
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 5.0e-37 157.9 134 61.2
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 5.0e-37 157.9 96 75.0
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 6.5e-37 157.5 107 68.2
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 6.5e-37 157.5 101 72.3
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 6.5e-37 157.5 114 67.5
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 8.5e-37 157.1 98 75.5
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.1e-36 156.8 98 75.5
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 1.1e-36 156.8 98 76.5
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.1e-36 156.8 99 71.7
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.1e-36 156.8 96 74.0
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.1e-36 156.8 117 65.8
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.1e-36 156.8 111 67.6
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 1.1e-36 156.8 103 71.8
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.1e-36 156.8 147 57.8
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.4e-36 156.4 98 74.5
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.4e-36 156.4 99 71.7
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 1.4e-36 156.4 107 72.0
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 1.4e-36 156.4 144 56.9
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 1.4e-36 156.4 147 57.1
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 1.4e-36 156.4 103 71.8
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.9e-36 156.0 96 74.0
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 1.9e-36 156.0 100 72.0
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 2.5e-36 155.6 117 66.7
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 3.2e-36 155.2 114 67.5
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 3.2e-36 155.2 145 57.9
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 4.2e-36 154.8 98 71.4
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 4.2e-36 154.8 117 67.5
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 5.5e-36 154.5 93 75.3
Gohir.A12G013866 Gossypium hirsutum HOM05D003620 ORTHO05D004261 7.2e-36 154.1 145 57.2
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 7.2e-36 154.1 106 69.8
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 9.4e-36 153.7 91 74.7
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 9.4e-36 153.7 145 56.6
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.2e-35 153.3 96 71.9
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 1.2e-35 153.3 106 68.9
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 1.2e-35 153.3 106 68.9
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.6e-35 152.9 103 67.0
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 2.1e-35 152.5 100 68.0
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 2.1e-35 152.5 96 72.9
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 2.1e-35 152.5 157 55.4
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 2.7e-35 152.1 91 73.6
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 2.7e-35 152.1 91 73.6
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 2.7e-35 152.1 91 73.6
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 2.7e-35 152.1 91 73.6
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 2.7e-35 152.1 96 70.8
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 3.6e-35 151.8 90 74.4
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 4.7e-35 151.4 93 72.0
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 6.1e-35 151.0 149 53.0
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 7.9e-35 150.6 96 68.8
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 7.9e-35 150.6 107 66.4
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 1.4e-34 149.8 108 63.9
Lj5C243G7 Lonicera japonica HOM05D003620 ORTHO05D004261 2.3e-34 149.1 114 64.9
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 3.0e-34 148.7 96 69.8
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 6.7e-34 147.5 108 64.8
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 6.7e-34 147.5 104 69.2
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 2.6e-33 145.6 133 60.2
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 4.4e-33 144.8 136 57.4
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 4.4e-33 144.8 151 54.3
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 7.4e-33 144.1 145 53.1
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 2.8e-32 142.1 94 66.0
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 3.1e-31 138.7 102 58.8
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 4.1e-31 138.3 97 69.1
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.5e-30 134.8 78 78.2
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 5.9e-30 134.4 102 67.6
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 1.0e-29 133.7 95 67.4
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 1.7e-29 132.9 145 48.3
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 2.2e-29 132.5 191 42.4
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.2e-29 132.5 109 64.2
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.9e-28 129.4 112 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 1.2e-27 126.7 99 58.6
GSVIVG01029735001 Vitis vinifera HOM05D003620 ORTHO05D004261 6.1e-27 124.4 114 57.0
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 2.0e-25 119.4 124 50.8
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.6e-22 109.8 93 58.1
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 2.5e-20 102.4 117 52.1
CBR_g4360 Chara braunii HOM05D003620 ORTHO05D004261 6.8e-18 94.4 83 50.6
HanXRQChr04g0126841 Helianthus annuus HOM05D003620 ORTHO05D004261 7.7e-14 80.9 49 73.5
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 3.8e-13 78.6 45 77.8
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 1.2e-11 73.6 91 40.7
Haze_10763 Corylus avellana HOM05D003620 ORTHO05D004261 4.7e-11 71.6 53 71.7
Haze_10767 Corylus avellana HOM05D003620 ORTHO05D004261 8.0e-11 70.9 52 71.2
QL08p057600 Quercus lobata HOM05D003620 ORTHO05D004261 5.2e-10 68.2 55 67.3
Cpa.g.sc2.53 Carica papaya HOM05D003620 ORTHO05D004261 6.8e-10 67.8 64 59.4
SEGI_17560 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 3.4e-09 65.5 44 65.9
Medtr7g104390 Medicago truncatula HOM05D003620 ORTHO05D004261 1.2e-06 57.0 49 55.1


User provided reference genes

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