Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-52 209.1 99 100.0
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.0e-20 102.4 129 47.3
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.1e-18 96.7 129 43.4
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.9e-18 95.9 129 42.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.2e-18 95.1 129 45.0
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.2e-18 95.1 129 45.0
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.1e-18 94.7 129 42.6
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 4.1e-18 94.7 129 44.2
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 7.0e-18 94.0 129 41.9
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 7.0e-18 94.0 129 41.9
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 2.0e-17 92.4 129 41.9
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.0e-17 92.4 129 42.6
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.6e-17 91.3 129 41.9
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.0e-16 90.1 129 40.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.7e-16 89.4 129 40.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 2.3e-16 89.0 129 40.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.9e-16 88.2 129 40.3
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.0e-16 87.8 129 39.5
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 5.0e-16 87.8 129 41.1
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 6.6e-16 87.4 129 40.3
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.1e-15 86.7 129 41.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.5e-15 86.3 129 38.0
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.5e-15 86.3 129 38.8
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.9e-15 85.9 129 38.8
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.9e-15 85.9 129 41.1
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.3e-15 85.1 129 39.5
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.3e-15 85.1 129 41.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 4.3e-15 84.7 129 38.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 4.3e-15 84.7 129 38.0
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 7.3e-15 84.0 129 42.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 37.2
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 41.1
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 42.6
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 42.6
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 37.2
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 9.5e-15 83.6 129 40.3
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.2e-14 83.2 129 38.8
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.2e-14 83.2 129 38.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.6e-14 82.8 129 38.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.8e-14 82.0 129 40.3
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 2.8e-14 82.0 129 40.3
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 2.8e-14 82.0 129 38.0
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.8e-14 82.0 129 37.2
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 3.6e-14 81.6 128 38.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.6e-14 81.6 128 38.3
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.6e-14 81.6 129 37.2
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.6e-14 81.6 129 37.2
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 3.6e-14 81.6 129 41.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 4.7e-14 81.3 129 38.8
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.7e-14 81.3 128 38.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 6.2e-14 80.9 129 37.2
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.1e-13 80.1 129 34.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.4e-13 79.7 129 40.3
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.4e-13 79.7 129 38.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.4e-13 79.7 129 40.3
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.4e-13 79.7 129 38.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.8e-13 79.3 129 37.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.8e-13 79.3 129 38.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.8e-13 79.3 129 37.2
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.3e-13 79.0 129 38.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 2.3e-13 79.0 129 38.0
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.3e-13 79.0 129 37.2
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.3e-13 79.0 129 36.4
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 3.1e-13 78.6 129 35.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 3.1e-13 78.6 129 38.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 4.0e-13 78.2 129 38.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 8.9e-13 77.0 129 37.2
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 8.9e-13 77.0 129 37.2
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 8.9e-13 77.0 129 37.2
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 8.9e-13 77.0 129 38.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.2e-12 76.6 129 37.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-12 76.6 129 38.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-12 76.6 129 38.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.2e-12 76.6 129 34.9
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.2e-12 76.6 129 34.9
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.5e-12 76.3 129 37.2
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.5e-12 76.3 129 37.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 3.4e-12 75.1 130 36.2
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 3.4e-12 75.1 129 35.7
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.4e-12 75.1 129 35.7
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 4.4e-12 74.7 129 36.4
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 5.8e-12 74.3 129 36.4
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 5.8e-12 74.3 129 36.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 5.8e-12 74.3 129 38.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 5.8e-12 74.3 129 36.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 7.5e-12 73.9 129 37.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 7.5e-12 73.9 128 35.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 9.9e-12 73.6 129 36.4
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 9.9e-12 73.6 129 37.2
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.7e-11 72.8 129 35.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.7e-11 72.8 129 34.9
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.9e-11 72.0 102 44.1
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.7e-11 71.6 129 35.7
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.1e-10 70.1 129 33.3
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.2e-10 68.6 129 35.7
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 4.1e-10 68.2 129 34.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.4e-10 67.8 57 57.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.4e-10 67.8 40 75.0
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.2e-09 66.6 129 33.3


User provided reference genes

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