Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23184 Davidia involucrata HOM05D004105 ORTHO05D030859 9.7e-68 260.0 129 100.0
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 5.2e-37 157.9 111 75.7
Actinidia36826 Actinidia chinensis HOM05D004105 ORTHO05D030859 1.5e-36 156.4 107 75.7
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 8.3e-35 150.6 109 75.2
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 2.7e-33 145.6 105 73.3
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 1.0e-32 143.7 103 75.7
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.7e-32 142.9 108 72.2
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 1.7e-32 142.9 105 72.4
Nitab4.5_0011777g0030 Nicotiana tabacum HOM05D004105 ORTHO05D005649 2.9e-32 142.1 111 68.5
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 8.6e-32 140.6 108 71.3
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 2.5e-31 139.0 104 71.2
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 5.5e-31 137.9 103 71.8
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 1.2e-30 136.7 114 65.8
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 2.1e-30 136.0 102 68.6
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 2.1e-30 136.0 106 67.9
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 2.1e-30 136.0 108 68.5
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 2.8e-30 135.6 105 66.7
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 2.8e-30 135.6 102 67.6
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 3.6e-30 135.2 102 67.6
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 6.1e-30 134.4 128 60.9
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 8.0e-30 134.0 102 67.6
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 8.0e-30 134.0 112 66.1
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 66.7
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 1.0e-29 133.7 107 69.2
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 1.0e-29 133.7 102 68.6
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 1.0e-29 133.7 90 78.9
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 1.0e-29 133.7 114 64.9
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 1.4e-29 133.3 102 68.6
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 1.4e-29 133.3 105 66.7
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 1.4e-29 133.3 105 66.7
Cfa018748 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.4e-29 133.3 103 65.0
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 1.4e-29 133.3 115 64.3
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 1.8e-29 132.9 106 66.0
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 2.3e-29 132.5 109 67.0
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.3e-29 132.5 102 68.6
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 3.0e-29 132.1 103 68.0
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 3.0e-29 132.1 109 67.0
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 3.0e-29 132.1 105 68.6
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 4.0e-29 131.7 109 64.2
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 4.0e-29 131.7 108 65.7
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 5.2e-29 131.3 106 67.9
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 6.8e-29 131.0 102 66.7
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 6.8e-29 131.0 102 66.7
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 8.8e-29 130.6 105 63.8
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 1.2e-28 130.2 102 74.5
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 1.5e-28 129.8 105 67.6
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 1.5e-28 129.8 106 68.9
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.0e-28 129.4 107 65.4
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 2.6e-28 129.0 105 67.6
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 3.4e-28 128.6 105 63.8
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 4.4e-28 128.3 102 66.7
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.4e-28 128.3 103 66.0
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.4e-28 128.3 82 80.5
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 4.4e-28 128.3 103 66.0
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 4.4e-28 128.3 110 63.6
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 5.7e-28 127.9 103 65.0
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 7.5e-28 127.5 105 66.7
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 7.5e-28 127.5 107 67.3
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 9.8e-28 127.1 105 66.7
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 9.8e-28 127.1 103 65.0
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 9.8e-28 127.1 105 67.6
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 1.3e-27 126.7 110 63.6
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.7e-27 126.3 76 80.3
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 2.2e-27 125.9 101 64.4
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 2.8e-27 125.6 69 87.0
Migut.E00611 Erythranthe guttata HOM05D004105 ORTHO05D005649 2.8e-27 125.6 107 62.6
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 2.8e-27 125.6 107 62.6
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 6.3e-27 124.4 107 62.6
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 8.3e-27 124.0 104 64.4
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.4e-26 123.2 105 63.8
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 1.4e-26 123.2 105 63.8
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 1.4e-26 123.2 105 63.8
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 3.1e-26 122.1 105 62.9
GSVIVG01008589001 Vitis vinifera HOM05D004105 ORTHO05D005649 4.1e-26 121.7 69 84.1
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 5.4e-26 121.3 105 62.9
Cpa.g.sc4.153 Carica papaya HOM05D004105 ORTHO05D030859 2.0e-25 119.4 69 85.5
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.0e-25 119.4 104 62.5
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.0e-25 119.4 104 62.5
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 2.7e-25 119.0 103 63.1
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 2.7e-25 119.0 106 60.4
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 3.5e-25 118.6 109 63.3
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 4.5e-25 118.2 105 60.0
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 4.5e-25 118.2 77 76.6
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 5.9e-25 117.9 105 61.9
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 5.9e-25 117.9 105 61.9
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 7.8e-25 117.5 130 54.6
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 1.7e-24 116.3 105 58.1
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 2.3e-24 115.9 111 63.1
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 8.6e-24 114.0 92 65.2
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 1.9e-23 112.8 111 61.3
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 1.9e-23 112.8 113 61.1
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 3.3e-23 112.1 103 63.1
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 7.3e-23 110.9 85 71.8
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 9.5e-23 110.5 118 55.1
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 1.2e-22 110.2 70 78.6
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 1.2e-22 110.2 103 57.3
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 1.6e-22 109.8 99 62.6
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 2.8e-22 109.0 103 61.2
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 2.8e-22 109.0 105 61.9
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 3.6e-22 108.6 108 58.3
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 4.7e-22 108.2 111 54.1
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 6.1e-22 107.8 123 53.7
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 6.1e-22 107.8 126 51.6
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 1.0e-21 107.1 92 59.8
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 1.8e-21 106.3 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 2.3e-21 105.9 114 52.6
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 3.0e-21 105.5 123 52.8
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 3.0e-21 105.5 106 59.4
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 6.8e-21 104.4 71 74.6
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 2.0e-20 102.8 71 70.4
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 4.4e-20 101.7 93 62.4
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 5.7e-20 101.3 114 48.2
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 7.5e-20 100.9 83 63.9
Nn3g16369 Nelumbo nucifera HOM05D004105 ORTHO05D005649 9.8e-20 100.5 119 52.1
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 1.3e-19 100.1 108 54.6
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 8.3e-19 97.4 56 78.6
Mapoly0094s0038 Marchantia polymorpha HOM05D004105 ORTHO05D005649 3.2e-18 95.5 71 66.2
MBI04_g30114_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 7.0e-18 94.4 56 76.8
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 7.0e-18 94.4 161 42.2
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 3.5e-17 92.0 58 72.4
arahy.Tifrunner.gnm1.ann1.IMIB52 Arachis hypogaea HOM05D004105 ORTHO05D005649 5.9e-17 91.3 81 59.3
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 5.9e-17 91.3 81 59.3
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 1.0e-16 90.5 106 51.9
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.5e-15 86.7 217 33.2
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.3e-15 85.5 42 92.9
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 4.3e-15 85.1 42 90.5
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 9.5e-15 84.0 43 83.7
Cre03.g158000 Chlamydomonas reinhardtii HOM05D004105 ORTHO05D005649 3.6e-14 82.0 55 65.5
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 3.6e-14 82.0 43 86.0
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 3.6e-14 82.0 42 88.1
AUR62029559 Chenopodium quinoa HOM05D004105 ORTHO05D005649 4.7e-14 81.6 43 90.7
HanXRQChr16g0498371 Helianthus annuus HOM05D004105 ORTHO05D005649 5.2e-13 78.2 45 80.0
Nitab4.5_0001089g0010 Nicotiana tabacum HOM05D004105 ORTHO05D005649 5.2e-13 78.2 111 45.9
MCO04G178 Micromonas commoda HOM05D004105 ORTHO05D005649 1.5e-12 76.6 77 53.2
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 5.8e-12 74.7 39 84.6
PRCOL_00001317 Prasinoderma coloniale HOM05D004105 ORTHO05D005649 9.8e-12 73.9 46 69.6
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 4.3e-07 58.5 67 56.7
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 5.6e-07 58.2 64 53.1
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 7.3e-07 57.8 60 60.0


User provided reference genes

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