Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23062 Davidia involucrata HOM05D003897 ORTHO05D038990 1.3e-31 139.0 68 100.0
Dinv12208 Davidia involucrata HOM05D003897 ORTHO05D000011 5.5e-14 80.5 45 84.4
Hund06327 Selenicereus undatus HOM05D003897 ORTHO05D005095 9.1e-09 63.2 35 85.7
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 1.6e-08 62.4 34 85.3
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 2.7e-08 61.6 34 85.3
AL3G47140 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 4.5e-08 60.8 33 84.8
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 4.5e-08 60.8 33 84.8
EL10Ac9g22306 Beta vulgaris HOM05D003897 ORTHO05D005095 4.5e-08 60.8 34 82.4
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 5.9e-08 60.5 33 84.8
AT2G15400 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 5.9e-08 60.5 33 84.8
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 5.9e-08 60.5 33 84.8
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 5.9e-08 60.5 33 84.8
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
AUR62010272 Chenopodium quinoa HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
AUR62013252 Chenopodium quinoa HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
AUR62026162 Chenopodium quinoa HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Prupe.8G132400 Prunus persica HOM05D003897 ORTHO05D005095 7.7e-08 60.1 34 85.3
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 7.7e-08 60.1 33 81.8
Actinidia17882 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 79.4
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 79.4
ATR0782G093 Amborella trichopoda HOM05D003897 ORTHO05D005095 1.3e-07 59.3 29 96.6
Thhalv10011661m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 1.3e-07 59.3 33 81.8
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 85.3
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 85.3
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 85.3
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 85.3
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 85.3
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Lj5C213T4 Lonicera japonica HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 1.3e-07 59.3 34 82.4
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.7e-07 58.9 34 82.4
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 1.7e-07 58.9 34 82.4
PSO541G0439 Papaver somniferum HOM05D003897 ORTHO05D005095 1.7e-07 58.9 29 93.1
PSO675G0875 Papaver somniferum HOM05D003897 ORTHO05D005095 1.7e-07 58.9 29 93.1
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 1.7e-07 58.9 34 82.4
Sc18g0005670 Simmondsia chinensis HOM05D003897 ORTHO05D005095 1.7e-07 58.9 34 82.4
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 2.3e-07 58.5 34 79.4
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 2.3e-07 58.5 34 82.4
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 2.3e-07 58.5 34 82.4
Gohir.D07G187633 Gossypium hirsutum HOM05D003897 ORTHO05D005095 2.3e-07 58.5 34 79.4
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 2.3e-07 58.5 34 82.4
Lalb_Chr05g0219651 Lupinus albus HOM05D003897 ORTHO05D005095 2.9e-07 58.2 34 79.4
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 2.9e-07 58.2 34 82.4
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 2.9e-07 58.2 34 82.4
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 2.9e-07 58.2 34 82.4
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 3.8e-07 57.8 34 79.4
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
A09p10760 Brassica napus HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 84.8
C07p08390 Brassica napus HOM05D003897 ORTHO05D039781 3.8e-07 57.8 33 81.8
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 81.8
BraA09t36718Z Brassica rapa HOM05D003897 ORTHO05D005095 3.8e-07 57.8 33 84.8
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 3.8e-07 57.8 34 79.4
Gohir.D10G077900 Gossypium hirsutum HOM05D003897 ORTHO05D011058 3.8e-07 57.8 34 79.4
Pp3c14_9440 Physcomitrium patens HOM05D003897 ORTHO05D005095 3.8e-07 57.8 34 79.4
BcaC04g23047 Brassica carinata HOM05D003897 ORTHO05D005095 5.0e-07 57.4 33 81.8
C09p12730 Brassica napus HOM05D003897 ORTHO05D005095 5.0e-07 57.4 33 81.8
CDE06G1902 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 5.0e-07 57.4 45 60.0
Ca_18755_v3 Cicer arietinum L. HOM05D003897 ORTHO05D005095 5.0e-07 57.4 34 79.4
Haze_10156 Corylus avellana HOM05D003897 ORTHO05D005095 5.0e-07 57.4 45 64.4
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 5.0e-07 57.4 34 79.4
Lalb_Chr09g0328701 Lupinus albus HOM05D003897 ORTHO05D005095 5.0e-07 57.4 34 82.4
SEGI_05463 Sequoiadendron giganteum HOM05D003897 ORTHO05D005095 5.0e-07 57.4 41 68.3
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 5.0e-07 57.4 34 76.5
Medtr4g084150 Medicago truncatula HOM05D003897 ORTHO05D005095 6.6e-07 57.0 34 76.5
SMO367G1036 Selaginella moellendorffii HOM05D003897 ORTHO05D005095 6.6e-07 57.0 34 79.4
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 6.6e-07 57.0 29 86.2
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 6.6e-07 57.0 29 86.2
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 6.6e-07 57.0 29 86.2
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 6.6e-07 57.0 34 82.4
CARHR105780 Cardamine hirsuta HOM05D003897 ORTHO05D005095 8.6e-07 56.6 34 76.5
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 8.6e-07 56.6 34 73.5
TAR376G1028 Trochodendron aralioides HOM05D003897 ORTHO05D005095 8.6e-07 56.6 34 82.4
EL10Ac2g02487 Beta vulgaris HOM05D003897 ORTHO05D038990 1.1e-06 56.2 34 82.4
BcaB07g31789 Brassica carinata HOM05D003897 ORTHO05D005095 1.1e-06 56.2 33 78.8
Dinv42183 Davidia involucrata HOM05D003897 ORTHO05D005095 1.1e-06 56.2 34 76.5
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 1.1e-06 56.2 28 96.4
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 1.1e-06 56.2 28 96.4
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 1.1e-06 56.2 28 96.4
vmacro02010 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 1.1e-06 56.2 34 79.4
HPP92_020269 Vanilla planifolia HOM05D003897 ORTHO05D005095 1.1e-06 56.2 34 79.4
Atru.chr5.2594 Acer truncatum HOM05D003897 ORTHO05D005095 1.5e-06 55.8 34 79.4
Atru.chr9.455 Acer truncatum HOM05D003897 ORTHO05D005095 1.5e-06 55.8 34 79.4
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 1.5e-06 55.8 34 79.4
Rhsim11G0160900 Rhododendron simsii HOM05D003897 ORTHO05D005095 1.5e-06 55.8 29 82.8
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 79.4
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 79.4
DCAR_012421 Daucus carota HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 76.5
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 76.5
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 82.4
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 79.4
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 1.9e-06 55.5 34 79.4
TPR.G38266 Trifolium pratense HOM05D003897 ORTHO05D005095 1.9e-06 55.5 33 78.8
Aa31LG8G13200 Aethionema arabicum HOM05D003897 ORTHO05D005095 2.5e-06 55.1 33 75.8
arahy.Tifrunner.gnm1.ann1.I4XWR0 Arachis hypogaea HOM05D003897 ORTHO05D005095 2.5e-06 55.1 33 78.8
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 2.5e-06 55.1 35 77.1
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 2.5e-06 55.1 34 79.4
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 2.5e-06 55.1 28 92.9
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 2.5e-06 55.1 34 73.5
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 2.5e-06 55.1 34 73.5
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 3.3e-06 54.7 34 73.5
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 3.3e-06 54.7 34 73.5
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 3.3e-06 54.7 34 79.4
GSVIVG01003174001 Vitis vinifera HOM05D003897 ORTHO05D005095 3.3e-06 54.7 34 76.5
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 4.2e-06 54.3 34 73.5
AagrBONN_evm.TU.Sc2ySwM_117.2300 Anthoceros agrestis HOM05D003897 ORTHO05D005095 5.5e-06 53.9 34 70.6
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 5.5e-06 53.9 34 73.5
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 5.5e-06 53.9 34 73.5
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 7.2e-06 53.5 28 89.3
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 7.2e-06 53.5 34 70.6
THA.LOC104804386 Tarenaya hassleriana HOM05D003897 ORTHO05D005095 7.2e-06 53.5 34 70.6
Migut.N01173 Erythranthe guttata HOM05D003897 ORTHO05D005095 9.5e-06 53.1 34 73.5


User provided reference genes

Program Settings