Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 6.4e-196 687.2 335 100.0
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 2.6e-157 558.9 337 81.3
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 2.9e-156 555.4 332 81.9
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 4.2e-155 551.6 335 80.6
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 9.3e-155 550.4 337 79.5
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 1.6e-154 549.7 314 83.1
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 2.1e-154 549.3 331 81.6
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 3.5e-154 548.5 331 80.7
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 8.7e-153 543.9 316 82.6
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 1.1e-152 543.5 340 78.2
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 8.1e-151 537.3 339 77.6
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 1.4e-150 536.6 343 76.4
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 3.1e-150 535.4 340 77.4
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 1.2e-149 533.5 327 79.5
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 2.6e-149 532.3 331 77.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 5.8e-149 531.2 331 77.9
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 7.6e-149 530.8 327 78.3
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.3e-148 530.0 340 76.8
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 1.9e-147 526.2 340 76.5
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 2.5e-147 525.8 339 75.8
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 9.3e-147 523.9 307 81.4
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 7.9e-146 520.8 331 76.1
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 8.7e-145 517.3 329 76.9
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.5e-144 516.5 333 75.1
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.5e-144 515.8 338 76.0
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 3.3e-144 515.4 327 76.5
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 8.2e-143 510.8 329 73.9
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 2.4e-142 509.2 331 75.8
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 3.1e-142 508.8 334 74.0
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 3.1e-142 508.8 336 75.6
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 3.1e-142 508.8 332 75.3
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 6.9e-142 507.7 331 74.9
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 6.9e-142 507.7 324 75.3
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 1.5e-141 506.5 333 72.4
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 2.0e-141 506.1 312 78.5
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 2.6e-141 505.8 333 72.4
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 4.5e-141 505.0 312 77.6
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 4.5e-141 505.0 312 78.2
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 7.6e-141 504.2 331 74.6
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 1.0e-140 503.8 330 73.9
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 1.3e-140 503.4 339 72.6
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 3.8e-140 501.9 326 75.2
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 6.5e-140 501.1 339 73.5
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.1e-139 500.4 335 73.4
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 1.1e-139 500.4 312 76.9
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 1.1e-139 500.4 332 74.1
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 2.5e-139 499.2 312 76.9
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 3.2e-139 498.8 332 73.8
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 2.7e-138 495.7 332 71.7
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 4.6e-138 495.0 329 75.1
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 5.1e-137 491.5 321 72.6
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 1.1e-136 490.3 340 71.5
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.9e-136 489.6 339 72.3
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 5.7e-136 488.0 333 72.7
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 7.4e-136 487.6 356 69.4
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 1.3e-135 486.9 332 71.4
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 3.7e-135 485.3 335 71.3
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.3e-132 476.9 347 69.2
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 8.5e-132 474.2 336 71.7
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.1e-131 473.8 345 67.2
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 3.6e-130 468.8 330 71.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.6e-130 468.8 293 76.5
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 1.0e-129 467.2 335 69.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 9.7e-128 460.7 284 77.5
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.7e-127 459.9 334 69.5
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 6.3e-127 458.0 338 67.8
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.1e-126 457.2 306 74.5
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.1e-126 457.2 330 71.8
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 1.4e-126 456.8 322 70.2
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 1.8e-126 456.4 306 72.2
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 1.8e-126 456.4 329 67.2
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 3.1e-126 455.7 306 74.2
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.1e-126 455.7 314 71.7
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 4.1e-126 455.3 268 80.2
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 6.9e-126 454.5 306 73.2
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 6.9e-126 454.5 306 73.2
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 6.9e-126 454.5 340 69.7
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 5.9e-125 451.4 306 72.9
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 5.9e-125 451.4 306 72.9
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 7.7e-125 451.1 306 72.9
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 7.7e-125 451.1 337 67.7
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 1.7e-124 449.9 317 69.1
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 2.2e-124 449.5 320 69.1
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 5.0e-124 448.4 333 66.7
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 1.1e-123 447.2 272 77.9
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 3.2e-123 445.7 246 85.8
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 4.7e-122 441.8 340 65.3
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 1.0e-121 440.7 335 66.6
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 5.2e-121 438.3 307 70.7
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 5.7e-120 434.9 344 66.3
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.3e-119 433.7 270 75.9
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 6.3e-119 431.4 332 65.1
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 3.5e-117 425.6 232 87.1
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.9e-115 419.9 318 64.8
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 5.9e-109 398.3 272 72.1
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 3.8e-108 395.6 217 85.3
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 5.0e-108 395.2 256 73.8
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 1.1e-107 394.0 312 63.5
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 3.8e-100 369.0 312 60.6
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.7e-92 343.6 183 89.1
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.7e-92 343.6 183 89.1
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.5e-91 340.5 322 54.7
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.8e-89 333.6 233 66.5
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 9.8e-88 327.8 240 68.8
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 6.6e-84 315.1 306 51.0
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 3.2e-78 296.2 197 73.1
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 9.5e-75 284.6 235 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 1.6e-66 257.3 189 63.5
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 2.1e-66 256.9 150 82.7
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 9.6e-59 231.5 201 57.7
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.6e-42 177.6 150 62.7
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.4e-41 173.7 167 50.3
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 5.3e-33 146.0 78 85.9
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 7.9e-29 132.1 140 51.4
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 4.6e-21 106.3 59 84.7
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 2.6e-11 73.9 52 67.3
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 2.2e-10 70.9 262 29.0
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 2.0e-08 64.3 173 30.1
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 2.6e-08 63.9 172 32.0
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 7.7e-08 62.4 167 32.3
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 1.3e-07 61.6 175 29.7
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 1.7e-07 61.2 176 29.5
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 1.7e-07 61.2 176 29.5
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 1.7e-07 61.2 176 29.5
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 2.2e-07 60.8 177 31.1
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 2.2e-07 60.8 175 29.7
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 2.2e-07 60.8 177 31.1
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 2.2e-07 60.8 175 29.7
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 2.2e-07 60.8 177 31.1
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 2.2e-07 60.8 175 29.7
AT5G58070 Arabidopsis thaliana HOM05D003204 ORTHO05D003566 3.8e-07 60.1 172 31.4
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 176 29.0
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 175 29.7
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 3.8e-07 60.1 176 29.0
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 3.8e-07 60.1 175 30.9
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 29.4
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 3.8e-07 60.1 170 29.4
SGA_v2.0_scaffold206G41820 Striga asiatica HOM05D003204 ORTHO05D003566 5.0e-07 59.7 176 29.5
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 6.5e-07 59.3 177 30.5
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 6.5e-07 59.3 161 31.1
Eucgr.L00627 Eucalyptus grandis HOM05D003204 ORTHO05D003566 6.5e-07 59.3 161 31.1
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 6.5e-07 59.3 161 29.2
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 6.5e-07 59.3 166 30.1
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 8.5e-07 58.9 177 30.5
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 8.5e-07 58.9 161 30.4
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 161 29.2
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 166 30.1
Thhalv10014775m.g Eutrema salsugineum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 172 30.8
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 1.4e-06 58.2 178 30.9
Eucgr.C00377 Eucalyptus grandis HOM05D003204 ORTHO05D003566 1.4e-06 58.2 166 30.1
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 1.4e-06 58.2 167 30.5
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 1.4e-06 58.2 167 28.7
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 172 30.2
BraA10t43619Z Brassica rapa HOM05D003204 ORTHO05D003566 1.9e-06 57.8 175 29.1
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 29.9
Carub.0008s1862 Capsella rubella HOM05D003204 ORTHO05D003566 2.5e-06 57.4 172 29.7
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 2.5e-06 57.4 167 26.3
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 2.5e-06 57.4 166 29.5
arahy.Tifrunner.gnm1.ann1.U4K9V9 Arachis hypogaea HOM05D003204 ORTHO05D003566 4.2e-06 56.6 166 30.1
CAN.G520.3 Capsicum annuum HOM05D003204 ORTHO05D003566 4.2e-06 56.6 169 31.4
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 4.2e-06 56.6 167 29.9
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 5.5e-06 56.2 167 28.1
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 5.5e-06 56.2 167 30.5
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 7.2e-06 55.8 161 29.8
Peaxi162Scf00108g00615 Petunia axillaris HOM05D003204 ORTHO05D003566 7.2e-06 55.8 170 31.2
Gorai.009G054500 Gossypium raimondii HOM05D003204 ORTHO05D003566 9.4e-06 55.5 167 29.3


User provided reference genes

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