Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20834 Davidia involucrata HOM05D001816 ORTHO05D002001 1.0e-42 176.4 92 100.0
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 5.0e-18 94.4 58 87.9
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.5e-18 93.6 58 82.8
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 7.2e-17 90.5 58 79.3
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 1.6e-16 89.4 58 82.8
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.6e-16 89.4 79 62.0
Oeu027898.1 Olea europaea HOM05D001816 ORTHO05D002001 1.6e-16 89.4 60 78.3
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 3.6e-16 88.2 79 62.0
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 4.7e-16 87.8 58 81.0
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 1.0e-15 86.7 58 81.0
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 1.0e-15 86.7 58 81.0
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.4e-15 86.3 58 79.3
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 1.8e-15 85.9 79 62.0
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.3e-15 85.5 79 63.3
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 4.0e-15 84.7 60 76.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 4.0e-15 84.7 76 65.8
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.0e-15 84.7 73 65.8
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 5.2e-15 84.3 79 60.8
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 5.2e-15 84.3 55 78.2
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.2e-15 84.3 73 67.1
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 6.8e-15 84.0 80 58.8
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 8.8e-15 83.6 79 62.0
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 1.2e-14 83.2 58 77.6
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 1.2e-14 83.2 79 62.0
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 2.0e-14 82.4 80 58.8
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 2.0e-14 82.4 68 66.2
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 2.6e-14 82.0 79 60.8
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 3.4e-14 81.6 58 77.6
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 4.4e-14 81.3 76 61.8
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 5.7e-14 80.9 80 56.2
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.5e-14 80.5 80 56.2
Potri.007G070250 Populus trichocarpa HOM05D001816 ORTHO05D002001 7.5e-14 80.5 86 53.5
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.3e-13 79.7 58 75.9
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.3e-13 79.7 79 59.5
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.7e-13 79.3 58 72.4
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 2.8e-13 78.6 58 72.4
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 3.7e-13 78.2 58 70.7
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.7e-13 78.2 58 70.7
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 4.9e-13 77.8 79 57.0
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 8.3e-13 77.0 58 69.0
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 8.3e-13 77.0 79 57.0
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 8.3e-13 77.0 80 55.0
Cpa.g.c28071.1 Carica papaya HOM05D001816 ORTHO05D002001 1.1e-12 76.6 58 69.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 1.8e-12 75.9 58 69.0
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 2.4e-12 75.5 79 57.0
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.1e-12 75.1 79 58.2
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 3.1e-12 75.1 79 57.0
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 3.1e-12 75.1 58 67.2
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 4.1e-12 74.7 79 55.7
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 4.1e-12 74.7 58 65.5
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 4.1e-12 74.7 55 74.5
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 5.4e-12 74.3 58 67.2
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 5.4e-12 74.3 58 67.2
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 5.4e-12 74.3 58 63.8
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 5.4e-12 74.3 76 52.6
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 7.0e-12 73.9 79 55.7
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 7.0e-12 73.9 58 67.2
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 7.0e-12 73.9 58 67.2
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 7.0e-12 73.9 58 67.2
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 7.0e-12 73.9 58 70.7
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 9.2e-12 73.6 58 67.2
Cc11_g00080 Coffea canephora HOM05D001816 ORTHO05D002001 9.2e-12 73.6 58 69.0
MELO3C027308.2 Cucumis melo HOM05D001816 ORTHO05D002001 9.2e-12 73.6 58 67.2
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 9.2e-12 73.6 58 70.7
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 9.2e-12 73.6 58 65.5
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.2e-11 73.2 58 69.0
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.2e-11 73.2 58 69.0
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.6e-11 72.8 58 65.5
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.6e-11 72.8 58 65.5
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.6e-11 72.8 79 57.0
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.6e-11 72.8 79 57.0
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.6e-11 72.8 55 74.5
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.6e-11 72.8 58 65.5
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.6e-11 72.8 58 67.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.7e-11 72.0 79 57.0
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 2.7e-11 72.0 79 54.4
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.7e-11 72.0 79 54.4
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.7e-11 72.0 79 55.7
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.5e-11 71.6 79 54.4
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 3.5e-11 71.6 79 55.7
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 3.5e-11 71.6 58 63.8
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.5e-11 71.6 58 67.2
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 4.5e-11 71.2 56 66.1
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 4.5e-11 71.2 56 66.1
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 4.5e-11 71.2 56 66.1
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 4.5e-11 71.2 80 51.2
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 5.9e-11 70.9 79 53.2
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.9e-11 70.9 79 53.2
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.9e-11 70.9 79 53.2
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 5.9e-11 70.9 79 53.2
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 5.9e-11 70.9 60 63.3
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 5.9e-11 70.9 60 63.3
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 5.9e-11 70.9 58 62.1
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 7.8e-11 70.5 58 67.2
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 7.8e-11 70.5 79 54.4
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.0e-10 70.1 79 53.2
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 1.0e-10 70.1 79 51.9
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.3e-10 69.7 58 62.1
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.3e-10 69.7 58 63.8
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.3e-10 69.7 58 63.8
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.7e-10 69.3 68 60.3
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 1.7e-10 69.3 58 65.5
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 2.3e-10 68.9 75 56.0
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 2.3e-10 68.9 58 62.1
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 2.3e-10 68.9 58 65.5
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 2.3e-10 68.9 79 53.2
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.9e-10 68.6 79 51.9
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 2.9e-10 68.6 58 62.1
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.9e-10 68.6 76 53.9
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 5.0e-10 67.8 58 65.5
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 5.0e-10 67.8 58 65.5
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 6.6e-10 67.4 73 56.2
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 6.6e-10 67.4 79 49.4
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 8.6e-10 67.0 58 60.3
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 8.6e-10 67.0 57 63.2
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 8.6e-10 67.0 55 58.2
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.1e-09 66.6 79 51.9
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.1e-09 66.6 79 50.6
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.1e-09 66.6 79 50.6
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 3.3e-09 65.1 73 54.8
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.3e-09 64.7 68 57.4
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 4.3e-09 64.7 57 61.4
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 5.6e-09 64.3 56 62.5
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 5.6e-09 64.3 79 48.1
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 5.6e-09 64.3 58 56.9
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.2e-08 63.2 76 47.4
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.6e-08 62.8 58 60.3
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 3.6e-08 61.6 58 56.9
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 3.6e-08 61.6 58 56.9
MBI02_g31764_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 4.7e-08 61.2 36 77.8
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 6.1e-08 60.8 79 46.8
FAN22G1947 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.2e-06 56.6 47 63.8
CANSAT25G1750 Cannabis sativa HOM05D001816 ORTHO05D002001 3.4e-06 55.1 50 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 4.4e-06 54.7 73 43.8
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 5.7e-06 54.3 73 42.5


User provided reference genes

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