Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.8e-126 456.1 246 100.0
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 2.1e-95 352.8 254 80.3
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.8e-73 278.9 225 68.9
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 3.8e-73 278.9 234 67.9
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.9e-72 276.6 246 65.0
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 4.0e-70 268.9 224 70.5
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.9e-68 261.9 225 68.0
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 4.1e-67 258.8 236 64.8
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.1e-63 246.5 242 61.6
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 8.0e-63 244.6 203 68.5
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.8e-62 243.4 234 58.5
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 6.8e-62 241.5 245 58.0
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 2.0e-61 240.0 232 63.4
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 5.7e-61 238.4 251 57.8
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 5.7e-61 238.4 259 54.4
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 9.8e-61 237.7 221 63.8
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 1.7e-60 236.9 254 57.5
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.9e-60 236.1 233 60.1
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 8.3e-60 234.6 232 60.8
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 8.3e-60 234.6 246 57.7
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 2.4e-59 233.0 242 57.9
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 2.4e-59 233.0 223 60.1
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 5.4e-59 231.9 237 57.4
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 7.0e-59 231.5 222 60.8
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.2e-58 230.7 229 61.1
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.2e-58 230.7 223 61.9
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.0e-58 229.9 225 60.9
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.7e-58 229.6 238 60.9
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 3.5e-58 229.2 230 60.0
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.0e-57 227.6 245 54.7
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.7e-57 226.9 218 60.6
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.7e-57 226.9 234 59.4
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.3e-57 226.5 243 56.8
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 5.0e-57 225.3 231 59.3
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.9e-56 223.4 222 60.4
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 5.6e-56 221.9 228 58.3
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 5.6e-56 221.9 217 60.8
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.6e-56 221.9 229 56.3
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.3e-56 221.5 233 55.8
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.6e-55 220.3 232 58.2
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.4e-54 217.2 259 52.5
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.3e-54 216.5 231 57.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 2.3e-54 216.5 224 58.9
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.3e-54 216.5 241 57.3
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 2.3e-54 216.5 205 58.5
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.1e-54 216.1 216 60.2
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.2e-53 214.2 217 59.4
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 2.0e-53 213.4 209 60.8
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 4.4e-53 212.2 219 58.4
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 7.5e-53 211.5 210 60.5
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 9.8e-53 211.1 238 54.2
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.2e-52 209.9 256 53.1
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.9e-52 209.5 179 67.0
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 2.9e-52 209.5 234 52.6
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.9e-52 209.5 215 61.9
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 4.9e-52 208.8 247 55.1
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 4.9e-52 208.8 211 57.3
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 6.4e-52 208.4 236 53.0
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.4e-51 206.5 218 58.7
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 2.4e-51 206.5 265 49.4
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 5.4e-51 205.3 197 61.4
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 9.2e-51 204.5 218 58.3
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 9.2e-51 204.5 200 59.5
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 3.5e-50 202.6 251 50.6
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.5e-50 202.6 237 51.5
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 3.5e-50 202.6 235 53.2
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 4.6e-50 202.2 235 52.8
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 4.6e-50 202.2 205 62.4
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.3e-49 200.7 206 59.2
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 2.3e-49 199.9 217 56.2
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.3e-49 199.9 250 52.4
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 3.9e-49 199.1 255 49.4
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 5.0e-49 198.7 216 57.4
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 6.6e-49 198.4 229 55.9
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.6e-48 195.3 233 53.2
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 1.6e-47 193.7 215 57.7
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 2.1e-47 193.4 224 50.9
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 4.7e-47 192.2 236 50.0
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 4.7e-47 192.2 189 58.2
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 6.2e-47 191.8 249 49.0
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 4.4e-45 185.7 247 44.9
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 5.8e-45 185.3 248 46.0
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 4.9e-44 182.2 231 49.8
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 4.9e-44 182.2 234 50.4
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 6.4e-44 181.8 182 59.3
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.4e-43 180.6 244 45.9
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 5.4e-43 178.7 247 47.4
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.1e-42 176.8 230 50.4
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.3e-41 174.1 232 47.8
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.1e-40 171.0 209 47.4
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.3e-40 169.5 260 43.1
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 9.5e-40 167.9 254 43.3
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 9.5e-40 167.9 245 43.7
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 9.5e-40 167.9 216 47.2
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.2e-39 167.5 231 46.3
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 2.1e-39 166.8 232 46.6
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 2.1e-39 166.8 232 47.8
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 4.7e-39 165.6 250 44.0
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 6.2e-39 165.2 232 46.1
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 1.1e-38 164.5 229 44.5
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 5.8e-37 158.7 232 46.6
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 9.9e-37 157.9 225 44.4
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 9.9e-37 157.9 197 47.7
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.3e-36 157.5 207 46.4
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 2.2e-36 156.8 204 44.1
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 3.8e-36 156.0 192 57.3
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 6.4e-36 155.2 198 52.5
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 3.2e-35 152.9 229 47.6
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 5.4e-35 152.1 205 43.9
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 9.2e-35 151.4 227 44.9
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 7.8e-34 148.3 198 44.9
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 1.3e-33 147.5 192 43.8
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 3.3e-32 142.9 211 42.7
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 4.0e-30 136.0 201 42.8
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.2e-29 134.4 170 43.5
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 2.6e-29 133.3 236 40.7
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.9e-27 127.1 233 41.6
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 5.4e-27 125.6 204 42.6
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 9.3e-27 124.8 241 39.4
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 1.2e-26 124.4 216 41.2
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.1e-26 123.6 218 41.7
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 2.7e-26 123.2 215 41.4
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.7e-26 123.2 242 37.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 6.0e-26 122.1 234 39.7
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 7.8e-26 121.7 235 39.1
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 1.3e-25 120.9 234 39.7
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 3.9e-25 119.4 216 40.3
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 3.9e-25 119.4 233 40.3
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 8.7e-25 118.2 234 39.7
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 1.9e-24 117.1 216 40.7
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 9.6e-24 114.8 234 38.9
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.3e-23 114.4 228 37.3
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 2.1e-23 113.6 190 38.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 3.6e-23 112.8 239 38.1
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 2.4e-22 110.2 249 35.7
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 3.1e-22 109.8 234 38.5
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 4.0e-22 109.4 234 38.5
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.5e-21 107.5 237 36.7
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.7e-20 104.0 129 50.4
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 3.2e-19 99.8 181 40.3
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 7.1e-19 98.6 121 50.4
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 4.6e-18 95.9 211 35.5
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 1.3e-17 94.4 143 40.6
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 3.3e-16 89.7 226 34.5
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 4.8e-15 85.9 87 55.2
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.8e-14 84.0 172 38.4
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 2.4e-14 83.6 87 55.2
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.3e-12 77.8 177 32.8
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 9.3e-11 71.6 146 32.9
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 1.0e-09 68.2 212 28.8
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 8.7e-09 65.1 114 36.8
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.1e-08 64.7 181 29.3
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.9e-08 63.9 69 53.6
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 2.5e-08 63.5 93 38.7
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 2.5e-08 63.5 204 28.9
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 3.3e-08 63.2 147 32.7
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 9.6e-08 61.6 207 27.1
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 9.6e-08 61.6 105 33.3
DCAR_016539 Daucus carota HOM05D004667 ORTHO05D005522 3.7e-07 59.7 68 50.0
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.8e-07 59.3 107 42.1
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.8e-07 59.3 107 42.1
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 6.2e-07 58.9 55 56.4
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 6.2e-07 58.9 87 44.8
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 6.2e-07 58.9 87 44.8
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 6.2e-07 58.9 212 26.9
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 8.1e-07 58.5 145 28.3
MD02G1132000 Malus domestica HOM05D003097 ORTHO05D003437 1.1e-06 58.2 210 24.8
Duzib151G0978 Durio zibethinus HOM05D001139 ORTHO05D000936 1.4e-06 57.8 112 36.6
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 1.8e-06 57.4 69 40.6
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 2.4e-06 57.0 71 42.3
Hund14046 Selenicereus undatus HOM05D003097 ORTHO05D003437 4.0e-06 56.2 227 26.0
ATR0810G161 Amborella trichopoda HOM05D003097 ORTHO05D003437 5.3e-06 55.8 221 27.6
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 5.3e-06 55.8 69 42.0
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 9.0e-06 55.1 146 28.1


User provided reference genes

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