Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 6.5e-277 956.8 506 100.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.9e-208 728.8 520 77.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.6e-198 694.9 511 74.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.3e-196 688.7 506 75.7
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.0e-193 679.5 511 74.0
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.0e-189 667.2 432 81.2
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.5e-185 653.3 509 72.3
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.0e-181 640.6 508 71.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 8.7e-181 637.5 520 70.6
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 8.2e-179 630.9 520 70.4
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 7.7e-177 624.4 513 69.2
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 8.5e-176 620.9 518 68.0
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-174 617.1 509 69.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 2.7e-174 615.9 516 68.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 6.1e-174 614.8 510 67.1
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-173 613.6 511 69.3
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.4e-173 613.6 506 69.6
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.5e-172 610.1 519 67.1
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 3.3e-172 609.0 517 68.7
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.4e-170 603.6 509 68.4
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.4e-170 603.6 491 70.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.4e-170 603.6 514 68.1
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.9e-170 601.3 505 65.7
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.5e-169 600.1 514 67.1
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 3.4e-169 599.0 479 71.0
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.3e-168 597.0 515 66.6
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.8e-168 595.5 430 75.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.5e-167 592.8 513 67.1
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.2e-167 592.4 514 66.1
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 4.2e-167 592.0 512 65.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.5e-167 591.7 486 68.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.1e-166 589.7 486 69.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.9e-166 587.8 514 66.1
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 3.3e-164 582.4 506 67.0
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 7.4e-164 581.3 484 70.2
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 9.7e-164 580.9 482 68.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.8e-163 579.3 480 68.1
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.8e-163 578.6 475 68.4
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.4e-162 576.2 475 68.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.1e-162 575.9 484 67.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 5.3e-162 575.1 492 67.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.5e-161 573.5 477 67.7
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.7e-161 571.2 477 67.5
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.3e-160 570.5 521 64.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.7e-160 570.1 515 65.2
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.5e-159 567.0 505 65.3
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 2.5e-159 566.2 485 67.6
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 2.5e-159 566.2 510 64.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.5e-159 566.2 504 65.1
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 4.2e-159 565.5 497 67.0
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.6e-158 563.5 495 66.7
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.6e-158 563.5 486 67.9
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.7e-158 562.8 496 65.1
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 6.1e-158 561.6 490 66.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.0e-157 559.3 500 64.6
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.0e-157 559.3 510 62.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.7e-156 555.1 500 63.0
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 5.7e-156 555.1 511 63.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 7.5e-156 554.7 457 69.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 2.8e-155 552.7 485 67.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.7e-155 552.4 490 64.3
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.8e-155 552.0 474 66.0
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 6.3e-155 551.6 508 61.0
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.1e-154 550.8 495 63.4
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.4e-154 550.4 504 64.3
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.1e-154 548.9 486 65.4
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 5.3e-154 548.5 499 64.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.0e-154 548.1 424 72.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.1e-154 547.7 488 64.3
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.5e-153 545.4 466 66.5
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.3e-152 543.9 511 63.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 2.5e-151 539.7 473 64.9
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 7.2e-151 538.1 382 77.2
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.4e-151 537.7 480 63.8
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 2.7e-150 536.2 485 62.9
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 6.1e-150 535.0 430 68.1
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.8e-149 533.5 481 63.0
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.0e-149 532.3 483 65.8
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.5e-148 530.4 485 63.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.5e-148 530.4 477 62.7
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.5e-148 530.4 494 64.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.6e-148 529.6 525 60.6
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 3.4e-148 529.3 427 69.8
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.7e-147 526.9 422 69.4
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.1e-146 524.2 387 72.4
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.4e-146 523.1 489 63.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 9.1e-146 521.2 495 62.2
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.6e-145 520.4 486 62.3
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 2.0e-145 520.0 490 62.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.5e-145 519.2 494 58.7
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.2e-144 516.5 482 63.3
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.5e-143 513.8 499 61.9
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-143 513.5 490 62.9
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.9e-143 513.5 441 66.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 4.2e-143 512.3 484 63.2
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 5.5e-143 511.9 506 60.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.6e-142 510.4 384 70.8
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 3.0e-141 506.1 499 60.9
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 5.2e-141 505.4 489 61.8
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 8.8e-141 504.6 488 61.5
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.2e-140 504.2 486 62.1
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.2e-140 504.2 485 60.6
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.6e-140 503.1 491 61.3
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 5.7e-140 501.9 441 63.9
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.7e-139 500.4 486 59.9
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.8e-138 496.9 478 59.4
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.4e-138 496.5 491 60.7
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 9.2e-138 494.6 478 60.5
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 4.5e-137 492.3 510 58.6
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.3e-136 490.0 484 59.5
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.9e-136 489.6 493 61.1
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 5.0e-136 488.8 481 60.7
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 6.6e-136 488.4 493 60.9
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.9e-135 486.9 489 58.3
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 4.3e-135 485.7 481 60.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 7.3e-135 485.0 482 60.0
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.4e-133 480.7 466 59.7
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.0e-133 479.6 453 59.6
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 6.8e-133 478.4 491 57.6
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-132 476.9 483 57.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.6e-132 476.5 483 57.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-132 476.1 477 58.3
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.3e-131 474.2 488 58.2
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-131 474.2 485 57.1
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.2e-131 473.4 475 56.4
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 3.7e-131 472.6 487 58.3
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.4e-130 469.9 479 56.8
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-129 467.6 485 58.6
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.6e-129 467.2 484 57.6
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.5e-129 466.1 317 76.7
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 5.9e-129 465.3 491 57.0
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 2.3e-128 463.4 478 58.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.0e-128 462.2 485 55.5
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 6.6e-128 461.8 484 55.2
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.6e-128 461.5 467 57.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.3e-127 459.1 496 56.2
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.5e-127 458.0 481 57.2
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 6.2e-126 455.3 493 55.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 3.1e-125 453.0 480 57.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.5e-124 450.7 441 59.0
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 4.4e-124 449.1 503 54.1
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 7.5e-124 448.4 478 56.9
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 7.0e-122 441.8 453 58.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 5.4e-114 415.6 389 58.6
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-111 407.5 278 72.3
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 8.1e-110 401.7 511 49.7
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.5e-103 380.9 383 54.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.6e-100 368.6 484 50.2
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.9e-92 341.7 348 55.7
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.4e-90 337.8 480 44.0
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-86 324.3 475 48.8
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 4.9e-75 286.2 192 79.7
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 5.9e-68 262.7 386 44.6
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.8e-56 224.6 195 66.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 3.3e-55 220.3 612 31.9
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 6.3e-46 189.5 274 44.2
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-44 184.1 137 74.5
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 5.9e-44 183.0 147 65.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-42 178.7 331 40.5
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.7e-41 174.1 129 74.4
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 5.2e-40 169.9 145 69.7
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.7e-40 169.5 129 72.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.6e-39 167.5 117 66.7
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 5.5e-34 149.8 99 71.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 3.4e-31 140.6 340 33.8
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 6.1e-25 119.8 316 32.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.0e-25 119.4 99 61.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.7e-22 110.5 189 40.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.7e-22 110.5 189 40.7
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 4.5e-20 103.6 333 28.2
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.9e-18 98.2 318 33.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 2.1e-17 94.7 70 55.7
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.2e-12 79.0 47 74.5
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 7.3e-10 69.7 53 67.9
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 2.8e-09 67.8 109 43.1
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 4.0e-08 63.9 164 43.9
Thecc.02G021100 Theobroma cacao HOM05D003925 ORTHO05D004832 4.9e-06 57.0 44 72.7


User provided reference genes

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