Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 2.1e-77 292.4 155 90.3
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.8e-77 292.0 155 91.0
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.8e-77 292.0 155 92.3
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 2.3e-76 288.9 155 90.3
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 4.0e-76 288.1 155 89.7
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 6.8e-76 287.3 155 89.7
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 6.8e-76 287.3 155 88.4
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.9e-76 287.0 155 91.6
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.6e-75 285.4 155 89.7
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 3.4e-75 285.0 155 89.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 5.8e-75 284.3 155 87.7
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 9.8e-75 283.5 155 86.5
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.9e-74 282.0 155 86.5
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 2.9e-74 282.0 154 88.3
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 3.7e-74 281.6 155 90.3
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.7e-74 281.6 155 84.5
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.7e-74 281.6 155 85.2
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.9e-74 281.2 155 84.5
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 6.4e-74 280.8 155 85.8
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 1.4e-73 279.6 155 88.4
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.4e-73 279.6 155 89.0
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.9e-73 279.3 155 89.0
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.2e-73 278.5 155 85.2
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.1e-73 278.1 155 83.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.2e-72 276.6 155 85.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-72 276.6 155 83.2
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-72 276.2 155 86.5
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.7e-72 275.4 155 86.5
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.6e-72 274.6 155 85.8
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 3.9e-71 271.6 155 83.2
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 83.9
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 84.5
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 84.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.1e-70 270.0 155 82.6
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 83.9
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 85.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 83.2
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 81.9
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.5e-70 266.9 156 85.9
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.5e-70 266.9 156 85.9
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 78.1
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 78.7
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 6.2e-69 264.2 155 82.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 79.4
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 81.9
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.6
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 80.0
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 78.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 7.5e-67 257.3 155 78.1
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 77.4
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.1e-65 253.4 155 77.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 76.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 78.1
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 77.4
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 5.4e-65 251.1 145 83.4
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 80.0
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 76.8
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.2e-64 250.0 174 70.1
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 76.8
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 73.5
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 76.8
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 77.4
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 78.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 76.8
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 77.4
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 77.4
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 76.8
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.0e-63 245.4 153 77.1
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 76.1
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 76.8
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 5.1e-63 244.6 151 76.2
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 73.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.5e-62 242.3 152 75.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 74.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 74.8
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 74.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 5.6e-62 241.1 214 59.8
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 9.5e-62 240.4 155 76.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-61 239.6 150 80.0
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 74.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.8e-61 238.8 156 75.6
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 75.5
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 74.2
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.6e-61 238.4 145 77.9
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 73.5
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.4e-60 236.5 152 75.7
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.1e-60 235.3 150 79.3
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 3.1e-60 235.3 152 75.7
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 76.1
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 8.9e-60 233.8 133 82.7
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.6e-59 232.3 154 71.4
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 4.9e-58 228.0 146 80.1
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.1e-57 226.9 156 70.5
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.4e-57 226.5 156 71.2
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 5.4e-57 224.6 156 70.5
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.1e-56 222.6 147 72.1
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.1e-56 222.6 127 81.9
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 2.7e-56 222.2 147 72.8
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 4.6e-56 221.5 147 74.8
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 6.0e-56 221.1 133 79.7
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 3.0e-55 218.8 153 68.0
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.9e-55 218.4 152 71.7
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.6e-55 217.6 156 67.3
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.1e-54 216.9 156 68.6
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 3.6e-53 211.8 188 58.0
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 66.5
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 6.8e-52 207.6 155 69.0
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.0e-51 206.1 156 63.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.9e-49 199.5 152 61.2
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.4e-49 199.1 148 65.5
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.2e-49 198.7 162 63.0
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.6e-48 194.9 154 59.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.6e-48 194.9 154 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.0e-48 194.5 154 59.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.0e-47 193.7 154 59.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.7e-47 193.0 153 58.8
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.1e-46 190.3 128 68.8
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.5e-46 189.1 114 81.6
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 4.8e-45 184.9 153 60.1
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.1e-44 182.2 146 63.0
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.8e-42 175.3 99 85.9
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 7.1e-41 171.0 103 78.6
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.2e-40 170.2 91 91.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.7e-39 166.4 109 70.6
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.3e-39 166.0 109 71.6
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-38 163.7 144 52.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-38 163.3 104 75.0
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.7e-34 149.8 109 67.9
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.9e-33 146.4 83 83.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.4e-33 146.0 148 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 7.4e-30 134.4 148 45.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 3.7e-29 132.1 128 53.9
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 6.9e-28 127.9 152 49.3
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 8.2e-21 104.4 130 44.6
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-20 103.2 61 80.3
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-20 103.2 61 80.3
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 9.0e-20 100.9 137 40.1
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.1e-17 94.0 68 67.6
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 2.5e-17 92.8 50 84.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.5e-17 91.7 68 64.7
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 8.7e-15 84.3 129 35.7
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 2.9e-10 69.3 117 30.8
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.4e-07 60.5 40 62.5


User provided reference genes

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