Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-160 569.7 283 100.0
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-160 569.7 283 100.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.2e-147 526.6 284 93.0
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.3e-146 522.3 283 91.5
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 8.7e-146 520.4 283 89.8
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.5e-145 519.6 290 91.4
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.5e-145 518.8 285 91.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 4.3e-145 518.1 287 90.9
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 5.6e-145 517.7 289 90.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.6e-145 517.7 278 92.4
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 5.6e-145 517.7 285 91.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 9.6e-145 516.9 287 89.2
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.3e-144 516.5 275 93.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 6.2e-144 514.2 305 85.2
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 8.2e-144 513.8 274 92.7
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 8.2e-144 513.8 287 90.2
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.1e-143 513.5 296 87.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.4e-143 513.1 287 90.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.8e-143 512.7 298 87.6
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 5.3e-143 511.1 298 86.6
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 6.9e-143 510.8 291 89.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 9.0e-143 510.4 293 88.7
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 9.0e-143 510.4 301 86.4
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 9.0e-143 510.4 307 85.7
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.5e-142 509.6 273 92.3
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.5e-142 509.6 289 88.9
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.6e-142 508.8 303 85.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 4.5e-142 508.1 273 91.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.8e-142 507.7 296 87.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 7.6e-142 507.3 302 86.1
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.0e-141 506.9 291 89.0
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.3e-141 506.5 304 84.2
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.3e-141 506.5 296 86.8
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.9e-141 505.4 304 83.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.5e-140 502.3 273 91.2
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.2e-140 501.5 283 88.7
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.5e-140 501.1 286 89.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 9.3e-140 500.4 283 87.3
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.3e-140 500.4 298 85.6
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 2.1e-139 499.2 292 85.6
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.0e-139 497.7 299 85.3
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.9e-139 497.3 283 86.9
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 3.9e-138 495.0 274 90.1
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 3.9e-138 495.0 296 85.5
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.9e-138 495.0 326 78.2
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.1e-138 494.6 317 81.7
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.1e-137 493.4 280 87.1
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.9e-137 492.7 283 87.3
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.9e-137 492.7 322 80.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 2.5e-137 492.3 267 90.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.5e-137 492.3 288 85.8
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 3.3e-137 491.9 293 85.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 4.3e-137 491.5 303 83.5
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 5.7e-137 491.1 286 84.3
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.6e-136 489.6 287 85.0
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.2e-136 489.2 289 84.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 2.2e-136 489.2 297 84.5
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.8e-136 488.0 284 85.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 8.2e-136 487.3 281 85.4
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.1e-135 485.3 274 87.2
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 3.1e-135 485.3 298 83.6
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 5.3e-135 484.6 281 85.1
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 6.9e-135 484.2 284 85.2
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.2e-134 483.4 304 81.6
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.0e-133 480.3 273 87.2
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.0e-133 480.3 273 87.2
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.2e-133 479.2 296 84.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-132 476.5 287 84.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 4.2e-132 474.9 273 83.9
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 5.5e-132 474.6 252 92.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 9.3e-132 473.8 299 80.6
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.2e-131 473.4 293 81.2
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 4.6e-131 471.5 285 83.2
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 6.1e-131 471.1 283 86.2
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 7.9e-131 470.7 302 81.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 5.1e-130 468.0 277 84.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 5.1e-130 468.0 277 84.5
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 4.3e-129 464.9 277 81.6
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 5.7e-129 464.5 295 83.1
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 5.7e-129 464.5 290 80.3
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 7.4e-129 464.2 290 82.4
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 9.7e-129 463.8 280 81.1
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.7e-128 463.0 293 80.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.4e-127 459.9 310 77.1
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.8e-127 459.5 291 79.7
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.8e-127 459.5 291 79.7
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.1e-127 458.8 302 79.8
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 6.9e-127 457.6 292 78.8
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 6.9e-127 457.6 273 83.2
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.5e-126 456.4 292 81.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 3.4e-126 455.3 334 73.4
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 4.5e-126 454.9 292 79.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.9e-126 454.5 284 80.3
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 7.7e-126 454.1 308 77.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.0e-125 453.8 320 74.1
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-125 453.0 274 78.8
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.9e-125 452.2 273 82.8
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.9e-125 452.2 323 74.6
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 5.0e-125 451.4 309 74.8
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 6.1e-123 444.5 286 77.6
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.0e-122 443.7 294 78.6
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.0e-122 443.7 294 78.6
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.0e-121 439.5 278 78.4
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.0e-121 439.5 296 79.7
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.3e-121 438.7 276 79.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-119 433.7 283 75.6
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.9e-114 415.2 233 88.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.7e-112 409.8 222 91.4
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 7.0e-111 404.4 257 80.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.7e-107 392.5 264 72.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 6.7e-106 387.9 276 73.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 8.8e-106 387.5 290 71.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.0e-105 386.3 291 70.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.3e-105 385.6 293 70.3
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.8e-98 363.2 205 88.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.8e-98 363.2 255 72.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-97 360.5 249 71.5
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 9.5e-92 340.9 225 78.7
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.6e-91 339.0 196 87.8
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.8e-90 334.7 282 61.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.4e-89 332.4 283 60.4
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.8e-89 330.9 291 60.1
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.4e-87 327.0 190 86.3
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.1e-87 325.5 246 67.9
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 7.0e-87 324.7 267 64.8
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 9.2e-87 324.3 306 57.5
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 8.6e-85 317.8 181 89.0
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.1e-83 311.6 202 73.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.0e-77 294.3 181 80.1
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 4.0e-74 282.3 274 56.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 2.2e-72 276.6 246 66.7
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.6e-67 260.4 190 70.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.8e-66 255.0 147 87.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 8.1e-51 204.9 110 90.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 3.1e-50 203.0 108 91.7
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 9.0e-50 201.4 109 87.2
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 4.4e-49 199.1 116 86.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.6e-46 190.7 106 86.8
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 8.7e-45 184.9 113 79.6
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 2.6e-41 173.3 136 70.6
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.4e-39 165.6 260 40.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.6e-38 164.1 95 86.3
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 3.9e-37 159.5 94 83.0
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.9e-36 157.1 94 85.1
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 5.8e-33 145.6 232 42.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.8e-33 145.6 104 71.2
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 7.6e-33 145.2 268 33.2
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.5e-28 131.0 66 93.9
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.3e-28 129.8 258 33.7
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.3e-27 127.9 118 62.7
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.3e-27 127.9 118 62.7
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 2.1e-27 127.1 247 32.0
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.8e-27 126.7 180 45.0
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.8e-27 126.7 118 63.6
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.8e-27 125.9 105 68.6
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-26 124.0 118 61.0
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.4e-26 123.6 118 61.9
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 2.6e-25 120.2 118 61.0
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 7.6e-25 118.6 118 60.2
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.0e-21 106.7 154 41.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 5.1e-21 105.9 86 66.3
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 5.7e-20 102.4 148 43.2
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.2e-19 98.6 55 90.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.1e-18 98.2 83 65.1
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 5.5e-15 85.9 58 75.9
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.2e-14 84.7 46 80.4
Lj5A834G28 Lonicera japonica HOM05D002180 ORTHO05D001339 6.1e-06 55.8 119 26.1


User provided reference genes

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