Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 0.0e+00 1090.9 772 100.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 2.2e-252 875.9 783 77.7
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.2e-224 783.9 788 71.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 4.9e-215 751.9 790 73.3
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.1e-214 749.2 778 74.7
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.5e-208 730.3 787 71.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.4e-206 723.0 771 74.6
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.2e-199 699.9 781 70.9
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 8.3e-199 698.0 784 67.0
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.2e-197 694.1 784 69.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.7e-194 682.2 782 63.9
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.9e-191 672.9 780 68.6
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 3.7e-191 672.5 777 66.5
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 9.2e-190 667.9 784 67.0
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 5.1e-188 662.1 811 63.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 9.5e-187 657.9 787 63.0
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 9.5e-187 657.9 780 68.5
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.6e-186 657.1 782 62.1
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.9e-183 646.4 750 70.0
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.7e-183 646.0 791 66.5
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 4.9e-183 645.6 781 66.7
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 8.4e-183 644.8 784 64.2
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.7e-181 639.8 780 54.0
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 9.6e-179 631.3 777 65.3
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.6e-178 629.4 796 64.7
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.9e-175 619.8 780 66.8
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.4e-174 616.7 779 61.7
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.4e-174 616.7 841 62.8
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.4e-174 616.7 776 62.6
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 9.3e-174 614.8 784 59.4
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.1e-173 613.6 780 65.4
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 6.0e-173 612.1 779 61.6
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 3.0e-172 609.8 772 61.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.5e-171 607.4 789 68.6
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 7.3e-171 605.1 750 64.1
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 7.3e-171 605.1 731 61.4
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.6e-170 604.0 785 55.7
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.8e-170 602.4 786 64.5
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 6.2e-170 602.1 783 57.3
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.2e-168 597.8 781 62.5
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.0e-168 597.0 778 63.8
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 3.4e-168 596.3 786 67.3
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.7e-167 594.0 784 59.7
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 6.4e-167 592.0 785 61.0
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.1e-166 591.3 785 59.9
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.4e-166 590.9 784 61.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.2e-166 589.7 778 60.7
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.9e-165 585.1 790 60.1
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.7e-164 583.9 777 61.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 2.8e-162 576.6 750 62.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.4e-161 574.3 790 58.9
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.4e-161 573.5 787 60.4
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.5e-160 570.9 785 59.1
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 5.8e-160 568.9 771 63.4
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 3.8e-159 566.2 785 59.2
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 4.9e-159 565.8 786 57.8
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.4e-159 565.1 784 59.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.4e-158 564.3 780 57.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 3.2e-158 563.1 782 56.8
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 4.2e-158 562.8 788 59.0
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 9.3e-158 561.6 781 55.3
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 2.7e-157 560.1 782 61.4
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 3.5e-157 559.7 784 60.6
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 3.0e-156 556.6 697 63.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.6e-154 550.8 782 59.0
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.1e-154 550.4 786 59.2
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.8e-154 550.1 790 60.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.8e-154 549.3 786 55.2
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.4e-153 547.7 761 51.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 6.9e-153 545.4 813 58.8
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.9e-153 545.4 793 61.4
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.0e-152 543.9 782 61.3
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.6e-152 543.5 783 58.6
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 4.5e-152 542.7 780 58.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.9e-151 539.3 778 60.3
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 4.2e-150 536.2 785 58.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 5.5e-150 535.8 783 60.2
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 9.3e-150 535.0 776 59.9
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.9e-148 529.6 764 55.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.1e-145 521.5 782 58.6
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.7e-143 514.2 785 54.8
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 9.3e-142 508.4 784 48.9
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.1e-141 507.3 782 58.7
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.7e-141 506.9 795 58.9
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.3e-140 504.6 783 56.3
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.1e-137 495.0 773 56.3
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.0e-135 488.4 786 54.6
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.6e-133 481.1 778 59.9
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.6e-133 479.9 781 56.9
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.5e-131 474.6 781 53.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.8e-129 467.6 721 50.1
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 5.3e-129 466.1 781 57.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.4e-128 463.4 747 56.9
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.7e-127 461.1 753 57.6
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 8.5e-127 458.8 782 55.0
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.1e-126 458.4 781 54.9
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 1.9e-126 457.6 739 47.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.2e-125 454.9 781 54.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.7e-125 453.8 761 51.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 4.7e-125 453.0 785 56.6
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 5.2e-124 449.5 783 54.7
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 8.8e-124 448.7 804 54.9
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.5e-123 448.0 774 53.6
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.3e-123 446.8 794 51.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.7e-122 444.5 775 56.5
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 3.7e-122 443.4 787 51.6
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 3.7e-122 443.4 802 56.1
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.0e-120 437.6 785 50.6
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 3.5e-120 436.8 771 51.8
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 3.5e-120 436.8 771 51.8
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 3.5e-120 436.8 771 51.8
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 5.5e-118 429.5 784 55.2
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.6e-117 426.8 789 53.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 4.8e-114 416.4 782 52.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.0e-108 398.7 546 68.7
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.0e-108 398.7 782 53.3
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 8.5e-103 379.0 697 49.9
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.7e-96 357.5 846 47.4
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 8.0e-93 345.9 283 67.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.3e-92 344.4 822 48.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.5e-91 339.3 819 46.9
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 3.2e-89 334.0 716 51.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.0e-87 328.9 329 61.1
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.1e-77 294.7 584 52.7
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 2.9e-66 257.7 233 67.8
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.4e-65 254.6 233 67.0
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.2e-59 235.7 213 64.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 6.0e-56 223.4 239 57.3
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 5.1e-55 220.3 773 40.5
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.1e-49 199.9 178 68.0
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 7.9e-48 196.4 157 68.8
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.4e-44 184.9 304 45.4
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 5.3e-44 183.7 299 43.5
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-42 177.6 291 41.9
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 5.1e-39 167.2 126 71.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 7.2e-25 120.2 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 8.7e-23 113.2 72 76.4
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 3.3e-22 111.3 142 49.3
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 4.1e-20 104.4 83 56.6
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.4e-15 89.4 128 45.3
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 4.4e-14 84.3 106 40.6
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.1e-12 79.7 106 37.7
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 3.1e-12 78.2 126 39.7
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-10 72.8 144 34.0
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.1e-08 65.5 59 59.3
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 6.1e-08 63.9 189 33.9
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.9e-07 61.2 52 63.5
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.4e-06 57.8 130 38.5
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 7.4e-06 57.0 222 30.2
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 9.7e-06 56.6 222 29.7
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 9.7e-06 56.6 222 29.7


User provided reference genes

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