Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 3.0e-243 844.7 418 100.0
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 1.7e-190 669.5 457 75.1
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 4.2e-189 664.8 438 76.7
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 1.6e-188 662.9 444 76.6
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 8.0e-188 660.6 447 74.9
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 1.4e-187 659.8 447 74.9
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 4.0e-187 658.3 447 74.3
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 6.7e-187 657.5 447 74.5
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 1.2e-186 656.8 447 75.4
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 2.6e-186 655.6 425 79.8
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 1.7e-185 652.9 447 73.6
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 2.8e-185 652.1 447 73.8
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 4.8e-185 651.4 447 74.3
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 8.2e-185 650.6 447 73.6
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 4.1e-184 648.3 447 73.6
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 7.0e-184 647.5 444 74.8
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 1.6e-183 646.4 447 73.4
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 5.9e-183 644.4 446 73.3
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 7.7e-183 644.0 447 72.0
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 2.9e-182 642.1 445 74.2
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 5.0e-182 641.3 442 72.6
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 6.5e-182 641.0 447 71.4
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 1.1e-181 640.2 442 73.3
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.5e-181 639.8 401 78.8
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 2.5e-181 639.0 447 73.6
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 2.5e-181 639.0 447 72.3
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 4.2e-181 638.3 442 72.4
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 2.7e-180 635.6 444 71.8
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 2.7e-180 635.6 442 72.4
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 3.0e-179 632.1 503 66.6
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 4.0e-179 631.7 445 71.2
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 8.8e-179 630.6 445 71.2
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 8.8e-179 630.6 441 71.9
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 2.6e-178 629.0 445 72.1
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 2.6e-178 629.0 448 70.8
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 3.4e-178 628.6 448 70.8
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 3.4e-178 628.6 447 71.4
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 7.5e-178 627.5 449 70.8
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 7.5e-178 627.5 448 70.8
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 7.5e-178 627.5 448 70.5
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 9.8e-178 627.1 448 70.8
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 1.7e-177 626.3 448 70.3
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 1.8e-176 622.9 447 69.6
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 2.4e-176 622.5 445 70.3
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 2.4e-176 622.5 449 69.9
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 3.1e-176 622.1 449 69.5
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 4.1e-176 621.7 448 70.1
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 4.1e-176 621.7 448 70.1
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 4.1e-176 621.7 445 70.8
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 5.4e-176 621.3 437 71.2
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 7.0e-176 620.9 448 69.6
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 1.2e-175 620.2 439 71.3
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 1.6e-175 619.8 445 71.0
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 1.6e-175 619.8 445 71.7
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 2.0e-175 619.4 448 69.9
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 4.5e-175 618.2 446 69.7
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 4.5e-175 618.2 446 70.9
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 4.5e-175 618.2 438 71.7
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 4.5e-175 618.2 456 69.1
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 4.5e-175 618.2 486 66.7
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 5.9e-175 617.8 448 69.9
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 7.7e-175 617.5 449 69.5
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 1.7e-174 616.3 445 70.6
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 5.0e-174 614.8 439 71.1
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 6.5e-174 614.4 475 66.3
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 6.5e-174 614.4 449 70.4
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 8.5e-174 614.0 446 69.3
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 1.1e-173 613.6 439 70.8
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 1.5e-173 613.2 448 69.4
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 2.5e-173 612.5 447 69.6
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 5.5e-173 611.3 447 69.4
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 5.5e-173 611.3 445 68.3
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 7.2e-173 610.9 445 69.2
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 1.0e-171 607.1 449 68.8
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 2.3e-171 605.9 446 68.4
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 6.8e-171 604.4 445 68.3
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 4.4e-170 601.7 449 66.8
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 9.8e-170 600.5 464 66.2
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 2.2e-169 599.4 466 66.3
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 8.3e-169 597.4 464 65.9
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 8.3e-169 597.4 356 82.6
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 1.1e-168 597.0 446 68.4
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 1.4e-168 596.7 445 67.6
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 7.0e-168 594.3 449 69.0
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 7.7e-167 590.9 483 63.6
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 2.3e-166 589.3 441 68.0
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 3.3e-165 585.5 447 68.0
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 1.6e-164 583.2 438 66.7
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 8.0e-164 580.9 444 66.0
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 5.2e-163 578.2 438 66.9
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 2.0e-162 576.2 439 67.4
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 2.0e-162 576.2 437 67.0
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.7e-158 563.1 355 77.7
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 6.2e-156 554.7 447 65.5
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.9e-153 545.0 356 75.3
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 2.3e-150 536.2 402 69.2
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 3.9e-150 535.4 443 61.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.1e-149 533.9 453 61.4
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 1.9e-149 533.1 372 73.4
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 3.9e-142 508.8 322 75.8
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 2.1e-140 503.1 322 76.1
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 6.0e-135 485.0 435 55.4
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 6.6e-134 481.5 436 56.2
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 2.5e-133 479.6 303 78.9
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 2.8e-132 476.1 404 62.4
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 1.6e-127 460.3 449 53.2
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 5.1e-126 455.3 431 55.0
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 5.4e-120 435.3 438 50.9
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 1.1e-112 411.0 318 70.1
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 2.3e-110 403.3 426 47.7
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 2.3e-110 403.3 299 69.6
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 1.3e-108 397.5 286 71.0
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 2.4e-107 393.3 301 69.8
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 2.1e-103 380.2 446 46.6
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 9.0e-99 364.8 405 46.9
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 6.9e-91 338.6 208 82.2
Nitab4.5_0005317g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.2e-87 327.8 198 82.3
Lj9C409G6 Lonicera japonica HOM05D005082 ORTHO05D006474 4.7e-71 272.7 190 74.2
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 1.1e-48 198.4 107 88.8
CSS0018221 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 1.5e-48 198.0 117 82.9
SGA_v2.0_scaffold104G30258 Striga asiatica HOM05D005082 ORTHO05D006474 2.3e-46 190.7 145 66.2
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 1.2e-45 188.3 198 56.1
HPP92_019666 Vanilla planifolia HOM05D005082 ORTHO05D006474 4.4e-45 186.4 123 72.4
PGR142G3202 Punica granatum HOM05D005082 ORTHO05D006474 3.5e-42 176.8 122 68.0
PGR004G1860 Punica granatum HOM05D005082 ORTHO05D006474 7.8e-42 175.6 122 67.2
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 4.7e-39 166.4 175 54.3
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 2.4e-35 154.1 312 33.7
Pp3c2_37890 Physcomitrium patens HOM05D005082 ORTHO05D006474 5.8e-29 132.9 243 35.4
Aqoxy144s004 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 9.9e-29 132.1 196 36.7
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 2.3e-25 120.9 252 32.9
Zm00001eb428990 Zea mays HOM05D005082 ORTHO05D050782 2.3e-25 120.9 62 91.9
FAN04G1942 Fragaria x ananassa HOM05D005082 ORTHO05D006474 4.3e-24 116.7 245 33.9
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 8.4e-20 102.4 261 31.4
Aa31LG6G3290 Aethionema arabicum HOM05D005082 ORTHO05D006474 1.6e-18 98.2 69 72.5
Aqoxy2G01868 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 6.9e-14 82.8 42 81.0
FAN08G2453 Fragaria x ananassa HOM05D005082 ORTHO05D006474 6.9e-14 82.8 169 34.9
Lsat_1_v5_gn_8_156340 Lactuca sativa HOM05D005082 ORTHO05D006474 2.2e-12 77.8 59 55.9
FAN18G1553 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.4e-11 75.1 72 56.9
SalBow6G7034 Salvia bowleyana HOM05D005082 ORTHO05D050782 1.4e-11 75.1 74 50.0
RcHm_v2.0_Chr3g0490481 Rosa chinensis HOM05D005082 ORTHO05D006474 6.2e-07 59.7 37 70.3


User provided reference genes

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