Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv13172 Davidia involucrata HOM05D003480 ORTHO05D029240 2.7e-48 195.3 121 100.0
CiPaw.10G049800 Carya illinoinensis HOM05D003480 ORTHO05D004425 9.5e-25 117.1 64 82.8
Dinv17321 Davidia involucrata HOM05D003480 ORTHO05D004425 1.2e-24 116.7 64 82.8
Dinv40570 Davidia involucrata HOM05D003480 ORTHO05D004425 1.2e-24 116.7 64 82.8
CiPaw.09G060800 Carya illinoinensis HOM05D003480 ORTHO05D004425 1.6e-24 116.3 64 81.2
PGR042G2561 Punica granatum HOM05D003480 ORTHO05D004425 2.1e-24 115.9 64 81.2
CSS0026003 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 6.2e-24 114.4 64 81.2
DCAR_024898 Daucus carota HOM05D003480 ORTHO05D004425 6.2e-24 114.4 64 78.1
TWI38G1399 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 6.2e-24 114.4 64 79.7
arahy.Tifrunner.gnm1.ann1.FXY2MK Arachis hypogaea HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
arahy.Tifrunner.gnm1.ann1.R134T8 Arachis hypogaea HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
Glyma.13G238200 Glycine max HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
Glyma.15G075100 Glycine max HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
Lj6g0027126 Lotus japonicus HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
VMungo0540G0515 Vigna mungo HOM05D003480 ORTHO05D004425 8.0e-24 114.0 64 78.1
ClCG01G025340 Citrullus lanatus HOM05D003480 ORTHO05D004425 1.0e-23 113.6 64 78.1
CsaV3_6G052600 Cucumis sativus L. HOM05D003480 ORTHO05D004425 1.0e-23 113.6 64 78.1
Phvul.006G184500 Phaseolus vulgaris HOM05D003480 ORTHO05D004425 1.0e-23 113.6 64 78.1
Eucgr.D00614 Eucalyptus grandis HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 78.1
Gohir.A06G128300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Gohir.D06G132300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Gorai.010G154200 Gossypium raimondii HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Nitab4.5_0009438g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Nitab4.5_0011879g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Thecc.06G186000 Theobroma cacao HOM05D003480 ORTHO05D004425 1.4e-23 113.2 64 76.6
Cpa.g.sc27.36 Carica papaya HOM05D003480 ORTHO05D004425 1.8e-23 112.8 64 76.6
Solyc02g078120.2 Solanum lycopersicum HOM05D003480 ORTHO05D004425 1.8e-23 112.8 64 76.6
Sopen02g022950 Solanum pennellii HOM05D003480 ORTHO05D004425 1.8e-23 112.8 64 76.6
PGSC0003DMG400029694 Solanum tuberosum HOM05D003480 ORTHO05D004425 1.8e-23 112.8 64 76.6
TWI38G1181 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 1.8e-23 112.8 64 78.1
Cc02_g13470 Coffea canephora HOM05D003480 ORTHO05D004425 2.3e-23 112.5 64 76.6
Gohir.A10G026600 Gossypium hirsutum HOM05D003480 ORTHO05D004425 2.3e-23 112.5 64 75.0
Hma1.2p1_0673F.1_g201280 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 2.3e-23 112.5 64 79.7
Hma1.2p1_1222F.1_g268180 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 2.3e-23 112.5 64 79.7
Manes.11G028400 Manihot esculenta HOM05D003480 ORTHO05D004425 3.1e-23 112.1 64 76.6
CAN.G529.1 Capsicum annuum HOM05D003480 ORTHO05D004425 4.0e-23 111.7 64 75.0
Ciclev10017475m.g Citrus clementina HOM05D003480 ORTHO05D004425 5.2e-23 111.3 64 78.1
Gorai.011G028500 Gossypium raimondii HOM05D003480 ORTHO05D004425 5.2e-23 111.3 64 73.4
Prupe.4G048700 Prunus persica HOM05D003480 ORTHO05D004425 5.2e-23 111.3 64 78.1
Duzib192G0865 Durio zibethinus HOM05D003480 ORTHO05D004425 6.8e-23 110.9 64 75.0
Sed0021745 Sechium edule HOM05D003480 ORTHO05D004425 6.8e-23 110.9 64 76.6
Nn1g04114 Nelumbo nucifera HOM05D003480 ORTHO05D004425 8.9e-23 110.5 64 76.6
Nn1g06510 Nelumbo nucifera HOM05D003480 ORTHO05D004425 8.9e-23 110.5 64 76.6
vmacro03873 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 8.9e-23 110.5 64 78.1
vmacro03877 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 8.9e-23 110.5 64 78.1
Gohir.D10G027200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.2e-22 110.2 64 73.4
MD05G1338100 Malus domestica HOM05D003480 ORTHO05D004425 1.2e-22 110.2 64 76.6
TAR375G0365 Trochodendron aralioides HOM05D003480 ORTHO05D004425 1.2e-22 110.2 64 76.6
TAR626G0815 Trochodendron aralioides HOM05D003480 ORTHO05D004425 1.2e-22 110.2 64 76.6
Actinidia05643 Actinidia chinensis HOM05D003480 ORTHO05D004425 1.5e-22 109.8 64 75.0
MSTRG.15878 Avicennia marina HOM05D003480 ORTHO05D004425 1.5e-22 109.8 64 75.0
Duzib235G0380 Durio zibethinus HOM05D003480 ORTHO05D004425 1.5e-22 109.8 64 75.0
THA.LOC104812939 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 1.5e-22 109.8 64 76.6
COL.COLO4_31457 Corchorus olitorius HOM05D003480 ORTHO05D004425 2.0e-22 109.4 64 71.9
Sc17g0006150 Simmondsia chinensis HOM05D003480 ORTHO05D004425 2.0e-22 109.4 64 75.0
Sed0013036 Sechium edule HOM05D003480 ORTHO05D004425 3.4e-22 108.6 64 73.4
THA.LOC104812284 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 3.4e-22 108.6 64 75.0
AUR62018061 Chenopodium quinoa HOM05D003480 ORTHO05D004425 4.4e-22 108.2 64 75.0
Haze_06432 Corylus avellana HOM05D003480 ORTHO05D004425 4.4e-22 108.2 65 78.5
HanXRQChr01g0003861 Helianthus annuus HOM05D003480 ORTHO05D004425 4.4e-22 108.2 64 71.9
Potri.004G044500 Populus trichocarpa HOM05D003480 ORTHO05D004425 4.4e-22 108.2 64 75.0
Sabra04G0027700 Salix brachista HOM05D003480 ORTHO05D004425 4.4e-22 108.2 64 75.0
AUR62015260 Chenopodium quinoa HOM05D003480 ORTHO05D004425 5.8e-22 107.8 64 75.0
Peaxi162Scf00048g00153 Petunia axillaris HOM05D003480 ORTHO05D004425 5.8e-22 107.8 64 71.9
RcHm_v2.0_Chr5g0048541 Rosa chinensis HOM05D003480 ORTHO05D004425 5.8e-22 107.8 64 75.0
EL10Ac8g19153 Beta vulgaris HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 75.0
CSS0021711 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
CANSAT35G1561 Cannabis sativa HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 73.4
CDE07G0331 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
Gohir.D05G163900 Gossypium hirsutum HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
Gorai.009G169000 Gossypium raimondii HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
Sabra11G0037300 Salix brachista HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 73.4
SGA_v2.0_scaffold159G37637 Striga asiatica HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
SGA_v2.0_scaffold49G18296 Striga asiatica HOM05D003480 ORTHO05D004425 7.5e-22 107.5 64 71.9
Ca_00342_v3 Cicer arietinum L. HOM05D003480 ORTHO05D004425 9.8e-22 107.1 64 73.4
ECA248G3601 Erigeron canadensis HOM05D003480 ORTHO05D004425 9.8e-22 107.1 64 71.9
Rhsim13G0138500 Rhododendron simsii HOM05D003480 ORTHO05D004425 9.8e-22 107.1 64 75.0
unitig_8.g3642 Utricularia gibba HOM05D003480 ORTHO05D004425 9.8e-22 107.1 64 71.9
Aa31LG6G3040 Aethionema arabicum HOM05D003480 ORTHO05D004425 1.3e-21 106.7 64 71.9
Hund23769 Selenicereus undatus HOM05D003480 ORTHO05D004425 1.3e-21 106.7 64 73.4
CDE06G2702 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 1.7e-21 106.3 64 70.3
Lj1A1204T32 Lonicera japonica HOM05D003480 ORTHO05D004425 1.7e-21 106.3 64 73.4
Ah.12g058540 Amaranthus hybridus HOM05D003480 ORTHO05D004425 2.2e-21 105.9 64 73.4
Lsat_1_v5_gn_1_126340 Lactuca sativa HOM05D003480 ORTHO05D004425 2.9e-21 105.5 64 70.3
QL06p053406 Quercus lobata HOM05D003480 ORTHO05D004425 2.9e-21 105.5 58 79.3
Sp7g19050 Schrenkiella parvula HOM05D003480 ORTHO05D004425 2.9e-21 105.5 64 70.3
Aqoxy4G02656 Aquilegia oxysepala HOM05D003480 ORTHO05D004425 3.7e-21 105.1 64 68.8
Migut.H01483 Erythranthe guttata HOM05D003480 ORTHO05D004425 3.7e-21 105.1 62 72.6
CARHR227530 Cardamine hirsuta HOM05D003480 ORTHO05D004425 4.9e-21 104.8 64 70.3
FAN08G1211 Fragaria x ananassa HOM05D003480 ORTHO05D004425 4.9e-21 104.8 64 73.4
Gohir.A05G161200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 4.9e-21 104.8 64 70.3
FAN13G0993 Fragaria x ananassa HOM05D003480 ORTHO05D004425 6.4e-21 104.4 64 73.4
AT4G20980 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 8.3e-21 104.0 64 68.8
Migut.M01135 Erythranthe guttata HOM05D003480 ORTHO05D004425 8.3e-21 104.0 60 75.0
FvH4_5g27490 Fragaria vesca HOM05D003480 ORTHO05D004425 8.3e-21 104.0 64 73.4
FAN18G0389 Fragaria x ananassa HOM05D003480 ORTHO05D004425 8.3e-21 104.0 64 73.4
Psat1g204440 Pisum sativum HOM05D003480 ORTHO05D004425 8.3e-21 104.0 64 71.9
QL06p052924 Quercus lobata HOM05D003480 ORTHO05D004425 8.3e-21 104.0 58 77.6
Carub.0007s2046 Capsella rubella HOM05D003480 ORTHO05D004425 1.1e-20 103.6 64 68.8
CAN.G413.27 Capsicum annuum HOM05D003480 ORTHO05D004425 1.1e-20 103.6 64 70.3
Lalb_Chr20g0121821 Lupinus albus HOM05D003480 ORTHO05D004425 1.1e-20 103.6 64 73.4
FAN04G1437 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.4e-20 103.2 64 71.9
AL7G33170 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 1.9e-20 102.8 64 68.8
FvH4_3g37950 Fragaria vesca HOM05D003480 ORTHO05D004425 1.9e-20 102.8 64 71.9
FAN11G2816 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.9e-20 102.8 64 71.9
FAN21G3883 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.9e-20 102.8 64 71.9
Lalb_Chr15g0089781 Lupinus albus HOM05D003480 ORTHO05D004425 1.9e-20 102.8 64 70.3
AUR62019528 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.4e-20 102.4 64 67.2
PSO210G2817 Papaver somniferum HOM05D003480 ORTHO05D004425 3.2e-20 102.1 64 68.8
PSO541G6261 Papaver somniferum HOM05D003480 ORTHO05D004425 3.2e-20 102.1 64 71.9
PSO675G1395 Papaver somniferum HOM05D003480 ORTHO05D004425 3.2e-20 102.1 64 71.9
Thhalv10003390m.g Eutrema salsugineum HOM05D003480 ORTHO05D004425 4.1e-20 101.7 64 70.3
MBI10_g03527_MAGBIO Magnolia biondii HOM05D003480 ORTHO05D004425 4.1e-20 101.7 65 72.3
Sp2g09160 Schrenkiella parvula HOM05D003480 ORTHO05D004425 4.1e-20 101.7 64 70.3
FAN16G2584 Fragaria x ananassa HOM05D003480 ORTHO05D004425 7.0e-20 100.9 63 71.4
PSO210G2017 Papaver somniferum HOM05D003480 ORTHO05D004425 7.0e-20 100.9 64 67.2
TPR.G16497 Trifolium pratense HOM05D003480 ORTHO05D004425 7.0e-20 100.9 64 68.8
AUR62036107 Chenopodium quinoa HOM05D003480 ORTHO05D004425 9.2e-20 100.5 64 65.6
AL8G15580 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 1.2e-19 100.1 64 68.8
BcaC06g31628 Brassica carinata HOM05D003480 ORTHO05D004425 1.2e-19 100.1 64 68.8
BcaC06g34569 Brassica carinata HOM05D003480 ORTHO05D004425 1.2e-19 100.1 64 68.8
C07p27040 Brassica napus HOM05D003480 ORTHO05D004425 1.2e-19 100.1 64 68.8
BolC7t43234H Brassica oleracea HOM05D003480 ORTHO05D004425 1.2e-19 100.1 64 68.8
Medtr7g111950 Medicago truncatula HOM05D003480 ORTHO05D004425 1.2e-19 100.1 61 72.1
BcaB07g30957 Brassica carinata HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
BcaC04g21840 Brassica carinata HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
A09p21050 Brassica napus HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
C09p26790 Brassica napus HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
BolC9t55567H Brassica oleracea HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
BraA09t37704Z Brassica rapa HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
CARHR178810 Cardamine hirsuta HOM05D003480 ORTHO05D004425 1.6e-19 99.8 64 68.8
BcaB07g30952 Brassica carinata HOM05D003480 ORTHO05D004425 2.7e-19 99.0 64 67.2
ATR0665G315 Amborella trichopoda HOM05D003480 ORTHO05D004425 3.5e-19 98.6 65 67.7
AT5G44320 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 3.5e-19 98.6 64 67.2
BcaC06g31627 Brassica carinata HOM05D003480 ORTHO05D004425 3.5e-19 98.6 64 67.2
BraA06t27601Z Brassica rapa HOM05D003480 ORTHO05D004425 3.5e-19 98.6 64 67.2
SMO169G0124 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 3.5e-19 98.6 64 65.6
SMO298G0032 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 3.5e-19 98.6 64 65.6
ATR0665G336 Amborella trichopoda HOM05D003480 ORTHO05D004425 4.6e-19 98.2 65 70.8
TAR627G1095 Trochodendron aralioides HOM05D003480 ORTHO05D004425 4.6e-19 98.2 54 77.8
SEGI_12249 Sequoiadendron giganteum HOM05D003480 ORTHO05D004425 6.0e-19 97.8 64 67.2
A06p47300 Brassica napus HOM05D003480 ORTHO05D004425 7.8e-19 97.4 64 65.6
Psat3g013320 Pisum sativum HOM05D003480 ORTHO05D004425 7.8e-19 97.4 61 68.9
Potri.011G053500 Populus trichocarpa HOM05D003480 ORTHO05D004425 7.8e-19 97.4 64 67.2
HanXRQChr16g0516221 Helianthus annuus HOM05D003480 ORTHO05D004425 1.3e-18 96.7 64 64.1
AagrBONN_evm.TU.Sc2ySwM_228.3152 Anthoceros agrestis HOM05D003480 ORTHO05D004425 3.0e-18 95.5 64 62.5
Cfa014799 Carpinus fangiana HOM05D003480 ORTHO05D004425 3.0e-18 95.5 69 71.0
SHI13762 Sapria himalayana HOM05D003480 ORTHO05D004425 3.9e-18 95.1 64 65.6
Actinidia16555 Actinidia chinensis HOM05D003480 ORTHO05D004425 6.6e-18 94.4 49 83.7
Pp3c3_3440 Physcomitrium patens HOM05D003480 ORTHO05D004425 6.6e-18 94.4 64 64.1
Pp3c13_8400 Physcomitrium patens HOM05D003480 ORTHO05D004425 2.5e-17 92.4 64 62.5
Atru.chr10.1865 Acer truncatum HOM05D003480 ORTHO05D004425 7.3e-17 90.9 51 78.4
SEGI_11253 Sequoiadendron giganteum HOM05D003480 ORTHO05D029240 2.1e-16 89.4 64 59.4
SEGI_19488 Sequoiadendron giganteum HOM05D003480 ORTHO05D029240 2.1e-16 89.4 64 59.4
TPR.G1669 Trifolium pratense HOM05D003480 ORTHO05D004425 4.7e-16 88.2 52 73.1
CAN.G320.7 Capsicum annuum HOM05D003480 ORTHO05D004425 1.8e-15 86.3 60 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1925 Anthoceros agrestis HOM05D003480 ORTHO05D004425 4.0e-15 85.1 62 54.8
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 4.0e-15 85.1 51 74.5
CBR_g20021 Chara braunii HOM05D003480 ORTHO05D004425 2.0e-14 82.8 62 56.5
CBR_g8049 Chara braunii HOM05D003480 ORTHO05D004425 4.4e-14 81.6 62 56.5
Manes.04G137900 Manihot esculenta HOM05D003480 ORTHO05D004425 4.4e-14 81.6 48 72.9
Mapoly0112s0008 Marchantia polymorpha HOM05D003480 ORTHO05D004425 5.8e-14 81.3 61 54.1
Zm00001eb157540 Zea mays HOM05D003480 ORTHO05D004425 7.5e-14 80.9 58 60.3
Pp3c12_8550 Physcomitrium patens HOM05D003480 ORTHO05D004425 1.3e-13 80.1 61 50.8
Os05g0566500 Oryza sativa ssp. japonica HOM05D003480 ORTHO05D004425 3.7e-13 78.6 59 59.3
unitig_22.g5701 Utricularia gibba HOM05D003480 ORTHO05D004425 4.9e-13 78.2 48 68.8
Zm00001eb296070 Zea mays HOM05D003480 ORTHO05D004425 1.4e-12 76.6 58 60.3
Lsat_1_v5_gn_4_53780 Lactuca sativa HOM05D003480 ORTHO05D004425 1.6e-11 73.2 48 62.5
vmacro02645 Vaccinium macrocarpon HOM05D003480 ORTHO05D029240 4.6e-11 71.6 47 70.2
Carub.0008s0415 Capsella rubella HOM05D003480 ORTHO05D004425 3.0e-10 68.9 48 60.4
MCO16G041 Micromonas commoda HOM05D003480 ORTHO05D004425 2.0e-06 56.2 65 38.5
Cre05.g242300 Chlamydomonas reinhardtii HOM05D003480 ORTHO05D004425 4.4e-06 55.1 60 36.7
Haze_26349 Corylus avellana HOM05D003480 ORTHO05D004425 5.8e-06 54.7 60 36.7


User provided reference genes

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