Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 5.6e-181 637.5 322 100.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.3e-149 531.6 322 83.2
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 4.9e-145 518.1 323 80.2
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.3e-142 510.0 323 78.6
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.7e-142 509.6 322 79.5
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 3.9e-142 508.4 323 79.3
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 3.9e-142 508.4 322 79.5
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 8.7e-142 507.3 323 77.1
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 1.1e-141 506.9 322 78.3
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 4.3e-141 505.0 324 79.3
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 7.3e-141 504.2 311 80.4
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 8.1e-140 500.7 320 77.5
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.0e-138 496.1 323 78.0
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.7e-137 493.0 322 78.6
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 2.2e-137 492.7 323 75.9
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.1e-136 490.3 322 77.3
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.4e-136 490.0 320 76.2
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.9e-136 489.6 323 77.4
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.6e-135 486.5 323 75.2
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 3.5e-135 485.3 328 76.2
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.5e-135 485.3 328 76.2
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 4.6e-135 485.0 326 75.2
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.6e-135 485.0 362 68.8
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 7.9e-135 484.2 322 75.5
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 7.9e-135 484.2 322 73.6
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-134 483.8 323 75.2
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-134 483.8 323 75.2
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 3.0e-134 482.3 322 73.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 3.0e-134 482.3 322 74.8
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 6.7e-134 481.1 324 75.0
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.5e-133 479.9 324 76.5
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.9e-133 479.6 323 76.2
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 7.4e-133 477.6 323 76.2
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 2.8e-132 475.7 308 76.9
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 4.8e-132 474.9 321 74.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.8e-131 473.0 322 72.7
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 1.8e-131 473.0 321 73.5
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.0e-131 471.9 323 75.9
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.0e-131 471.9 317 76.3
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 6.9e-131 471.1 323 74.6
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.5e-130 469.9 308 77.3
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 5.8e-130 468.0 324 73.1
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 5.8e-130 468.0 322 73.9
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.0e-129 467.2 323 73.1
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.3e-129 466.8 311 74.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.2e-129 466.1 336 72.0
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.2e-129 466.1 322 74.2
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.4e-128 463.4 307 74.6
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.5e-128 461.5 323 71.8
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.8e-126 456.4 341 70.1
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 6.3e-124 448.0 323 73.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 8.2e-124 447.6 317 72.9
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.4e-123 446.0 322 69.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 5.3e-123 444.9 299 74.9
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 5.3e-123 444.9 324 71.6
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 2.6e-122 442.6 322 71.1
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 1.7e-121 439.9 324 69.4
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.8e-121 438.7 322 69.3
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.9e-120 436.4 320 68.8
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 4.2e-120 435.3 325 69.8
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.2e-119 433.7 322 69.6
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.0e-118 430.6 310 71.3
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.8e-118 429.9 319 69.3
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 3.0e-118 429.1 320 69.7
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 9.7e-117 424.1 325 66.8
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 3.7e-116 422.2 307 71.3
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.8e-115 419.9 293 71.3
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 5.3e-115 418.3 321 67.0
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 9.0e-115 417.5 320 68.4
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 4.5e-114 415.2 328 66.2
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.0e-113 414.1 302 70.2
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.3e-113 413.7 294 70.1
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 3.8e-113 412.1 299 70.9
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.1e-112 410.6 298 71.1
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.0e-110 404.1 293 70.3
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 3.0e-110 402.5 293 68.6
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 3.0e-110 402.5 296 69.9
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 8.8e-110 401.0 296 68.2
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.5e-109 400.2 293 70.3
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.0e-109 399.8 289 71.6
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 4.3e-109 398.7 300 66.7
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.3e-109 398.7 329 65.7
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.3e-108 397.1 293 69.6
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 2.8e-108 396.0 296 69.3
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 3.7e-108 395.6 321 66.0
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 8.2e-108 394.4 281 71.5
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.1e-107 394.0 301 66.1
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.2e-106 390.6 295 67.5
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 7.7e-106 387.9 270 71.5
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.0e-105 387.5 296 68.2
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.3e-105 387.1 294 68.0
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 5.0e-105 385.2 222 89.2
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 2.5e-104 382.9 315 64.1
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.2e-104 382.1 376 55.6
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.5e-101 373.6 324 61.7
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 2.4e-99 366.3 352 58.0
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.4e-99 366.3 340 58.2
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 7.0e-99 364.8 325 59.7
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 4.5e-98 362.1 301 61.5
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.9e-97 359.4 356 58.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.1e-95 353.2 324 59.9
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 5.2e-94 348.6 197 90.9
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.5e-93 347.1 220 81.8
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 5.7e-93 345.1 340 53.8
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.7e-92 343.6 244 71.7
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.1e-75 287.7 226 68.1
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.3e-73 280.8 334 46.1
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.2e-68 263.5 226 62.8
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 9.2e-67 258.1 289 49.5
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.5e-64 250.8 152 76.3
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 2.1e-63 246.9 338 45.6
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.0e-57 226.5 361 39.6
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.2e-55 221.1 203 60.1
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 8.4e-44 181.8 124 74.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.9e-32 144.1 91 72.5
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 5.6e-32 142.5 175 52.0
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.6e-32 142.5 89 73.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.8e-31 139.4 298 33.9
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 2.6e-29 133.7 80 78.8
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 2.6e-29 133.7 80 78.8
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 2.7e-26 123.6 350 27.4
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 8.1e-23 112.1 74 71.6
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 1.5e-21 107.8 333 27.3
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.5e-21 107.8 84 67.9
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 3.4e-21 106.7 84 66.7
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 3.4e-21 106.7 84 66.7
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 7.6e-21 105.5 78 71.8
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.7e-20 104.4 86 66.3
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 7.9e-18 95.5 52 84.6
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 4.8e-15 86.3 163 33.1
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.0e-12 78.6 44 77.3
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 7.9e-10 68.9 64 54.7
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 8.2e-07 58.9 47 63.8
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.4e-06 57.4 109 35.8


User provided reference genes

Program Settings