Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 5175.5 2611 100.0
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 5007.6 2608 97.4
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 3300.8 2616 66.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 3280.0 2680 65.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 3068.5 2631 61.8
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2976.8 2738 60.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2961.8 2615 60.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2951.8 2621 59.3
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2891.3 2693 58.3
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2868.6 2622 58.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2803.9 2621 60.0
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2781.1 2627 56.6
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2751.5 2630 56.5
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2751.1 2675 55.9
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2744.1 2611 56.7
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2714.1 2613 55.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2700.2 2623 54.7
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2681.0 2641 54.8
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2634.4 2641 54.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2630.9 2610 54.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2613.6 2633 54.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2557.7 2617 52.9
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2551.2 2619 52.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2545.0 2618 53.3
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2537.7 2607 53.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2528.8 2382 56.7
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2516.9 2609 52.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 2486.8 2612 52.1
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 2478.4 2610 51.8
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 2474.1 2770 50.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2430.2 2629 50.4
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2429.4 2611 51.1
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2426.4 2270 56.8
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2418.7 2603 51.1
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 2410.2 2664 50.1
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 2393.2 2610 50.9
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 2360.5 2673 50.4
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2353.9 2591 49.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 2342.8 2609 48.8
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 2336.2 2561 51.8
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 2331.6 2603 51.2
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2303.1 2634 48.5
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2301.9 2682 48.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 2294.6 2675 48.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2293.8 2621 48.5
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2290.4 2599 49.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 2285.8 2637 48.5
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2281.1 2677 48.8
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 2268.8 2571 51.1
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 2266.9 2676 48.4
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 2262.6 2643 48.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2258.8 2626 47.5
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2252.2 2615 48.3
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2238.8 2603 47.3
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2225.3 2604 47.4
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2219.9 2600 48.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2217.2 2617 47.2
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 2196.8 2599 48.1
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 2193.3 2559 49.4
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 2176.0 2597 47.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 2165.6 2596 47.8
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 2165.6 2568 47.3
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 2164.8 2599 47.2
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2144.4 2638 46.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2100.5 2590 46.4
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2088.9 2586 46.7
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 2082.8 2623 46.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 2047.7 2621 45.7
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 2046.2 2296 50.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 2033.1 2345 49.3
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2028.8 2550 46.5
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1992.2 2654 44.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1985.3 2055 52.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1981.5 1792 58.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1966.8 2608 44.1
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1919.4 2687 43.7
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1881.3 2043 50.4
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1843.6 2461 44.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1838.9 2141 47.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1823.9 2639 42.6
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1821.6 2631 42.6
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1808.9 2663 41.7
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1803.1 2672 42.1
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1745.3 2622 41.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1726.5 2678 40.1
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1671.0 2372 43.1
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1657.5 1752 51.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1654.8 2637 40.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1649.0 2644 40.7
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1627.5 2026 44.3
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1617.8 2602 40.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1608.2 1817 52.0
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1571.2 1729 50.9
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1543.9 2242 42.0
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1399.4 2234 40.2
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1385.9 2155 40.5
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1267.3 2526 35.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 0.0e+00 1171.0 914 66.7
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1167.1 787 75.6
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.1e-258 896.7 813 57.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.6e-244 850.9 2762 27.4
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.6e-241 841.6 592 74.2
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.8e-237 828.2 2583 28.4
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 7.3e-231 806.2 1152 44.3
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.5e-223 781.9 2772 26.6
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 6.2e-222 776.5 1157 41.0
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.0e-221 773.9 1248 39.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-219 768.1 1155 44.5
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.5e-210 736.9 627 62.8
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 4.2e-202 710.7 2559 27.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 9.7e-199 699.5 2833 25.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.5e-191 674.9 658 58.5
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.2e-172 612.8 553 59.0
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.7e-171 609.0 637 52.4
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.8e-166 590.9 731 47.2
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-161 575.9 918 37.8
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.7e-161 574.3 773 43.5
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.1e-153 548.9 399 70.2
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 7.3e-138 497.3 534 49.4
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.1e-120 438.7 925 34.1
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.6e-113 415.2 482 45.9
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.5e-111 408.3 726 37.1
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 4.2e-109 401.7 325 63.7
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 2.7e-108 399.1 2713 22.7
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 7.4e-98 364.4 468 45.9
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 2.0e-95 356.3 343 57.1
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.9e-91 342.0 390 50.0
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.5e-62 245.0 530 32.6
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.3e-57 230.7 186 65.6
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.1e-56 227.6 346 39.0
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 2.0e-55 223.4 183 60.7
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 7.7e-55 221.5 234 53.4
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.0e-54 218.8 222 54.1
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-53 216.5 349 38.1
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 8.0e-52 211.5 241 49.4
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.5e-50 207.2 331 38.1
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.2e-46 193.4 339 38.1
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-44 187.2 330 37.9
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.4e-42 179.1 151 60.9
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.2e-39 171.0 207 47.8
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.0e-38 167.9 199 45.7
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 6.4e-33 148.7 235 42.6
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.4e-32 147.5 138 55.8
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 2.4e-32 146.7 335 31.9
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.7e-30 140.6 120 58.3
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.6e-28 134.0 126 53.2
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-27 131.0 412 26.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.9e-25 122.5 246 35.4
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.4e-24 120.2 82 70.7
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 7.0e-24 118.6 130 56.2
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 3.5e-23 116.3 154 46.1
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-22 114.4 169 40.8
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 8.6e-22 111.7 395 23.3
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.1e-19 103.2 79 60.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.5e-18 100.9 335 26.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.5e-18 100.9 335 26.3
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 2.6e-18 100.1 116 45.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.3e-17 97.8 136 43.4
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-16 94.7 382 24.9
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 7.1e-16 92.0 148 32.4
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 9.2e-16 91.7 67 56.7
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-15 89.4 104 45.2
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 7.8e-15 88.6 264 28.8
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.1e-13 84.7 355 23.1
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.9e-13 84.0 229 29.7
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 5.6e-13 82.4 113 39.8
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 9.5e-13 81.6 265 27.9
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 8.1e-12 78.6 62 59.7
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.4e-11 77.8 288 29.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 5.8e-10 72.4 67 56.7
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 4.9e-09 69.3 51 64.7
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 1.4e-08 67.8 51 62.7
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-07 64.7 53 58.5
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-07 64.7 53 58.5
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-07 64.3 105 29.5
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 2.7e-07 63.5 45 66.7
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 6.0e-07 62.4 128 30.5
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-06 60.8 90 38.9
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.9e-06 59.7 156 32.1


User provided reference genes

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