Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 2051.6 1041 100.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1908.3 1038 92.7
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1845.5 1041 89.8
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1819.7 1016 90.6
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1793.9 1043 87.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1790.0 1017 89.3
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1783.8 1043 87.4
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1771.5 1041 85.5
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1767.7 1043 86.5
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1766.9 1016 88.1
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1757.3 1041 84.9
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1756.9 1050 86.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1754.6 1076 83.1
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1751.5 1042 84.5
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1750.7 1042 84.4
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1749.6 1042 85.9
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1749.2 1036 84.1
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1736.5 1066 83.7
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1734.9 1053 84.5
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1729.9 1042 83.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1728.0 1037 85.5
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1727.2 1037 85.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1725.7 1044 85.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1723.8 1046 84.2
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1723.4 1054 84.2
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1720.3 1039 83.7
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1719.5 1046 83.7
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1719.1 1042 83.1
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1715.7 1062 83.1
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1713.7 1048 84.3
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1712.6 1062 83.0
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1711.8 1046 83.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1706.8 1041 83.9
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1705.3 1052 82.7
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1704.5 1057 82.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1703.7 1048 83.5
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1701.8 1048 83.6
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1701.8 1044 82.7
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1697.6 1057 82.4
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1695.6 1071 81.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1693.3 1042 81.7
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1692.2 1044 82.9
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1683.3 1055 82.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1681.8 1063 82.4
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1676.8 1044 81.6
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1676.0 1041 81.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1672.9 1032 82.3
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1672.5 1043 81.9
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1672.1 1043 81.9
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1669.8 1050 82.7
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1649.8 1064 80.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1645.6 1024 81.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1632.1 1050 79.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1630.9 1016 80.5
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1626.3 1055 79.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1626.3 1042 79.9
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1622.8 1044 80.2
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1622.1 1050 79.5
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1617.8 1048 79.5
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1617.1 1041 79.3
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1614.4 1046 79.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1614.0 1053 78.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1614.0 1051 79.1
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1612.0 1051 79.1
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1610.9 1045 79.7
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1610.1 1045 79.8
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1052 77.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1056 79.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1606.7 1042 78.3
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1605.1 1052 78.2
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1604.7 1052 78.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1604.7 1052 79.7
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1050 78.9
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1600.1 1052 77.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1598.6 1052 77.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1596.6 1052 78.0
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1595.1 1054 77.2
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1053 78.3
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1590.1 1052 77.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1584.3 1053 78.2
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1048 76.8
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1581.2 1152 71.8
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1058 76.2
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1054 76.6
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1057 76.1
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1057 76.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1058 76.1
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1572.0 1063 76.9
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1571.6 1048 76.5
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1571.6 1061 76.8
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1570.8 1052 77.8
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1568.5 1054 76.5
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1017 77.7
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1563.1 1050 77.6
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1562.7 1050 77.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1562.0 1059 76.3
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1560.0 1056 75.8
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1023 76.7
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1094 75.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1092 74.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1019 74.4
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1463.7 1051 72.6
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1450.3 1048 74.0
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1436.0 956 76.3
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1434.1 936 77.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1424.5 1041 71.5
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1381.7 1030 70.5
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1360.1 961 71.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1356.3 1029 68.8
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1335.5 1013 69.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1307.7 1018 65.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1248.8 826 76.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1142.9 1025 58.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1122.5 761 76.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1120.1 1022 59.0
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1095.5 629 88.9
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 6.4e-311 1070.8 1030 55.5
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 8.5e-311 1070.5 1023 55.0
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.4e-297 1026.5 722 71.6
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.6e-296 1022.3 717 71.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-293 1012.7 1012 56.8
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 4.9e-279 964.9 1035 52.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-273 946.0 964 57.2
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 4.5e-272 941.8 1037 52.7
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-270 937.2 1028 52.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.2e-269 933.7 620 76.1
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.9e-245 851.3 554 78.0
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.2e-240 837.4 479 88.5
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 6.1e-221 771.9 447 87.9
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 4.0e-212 742.7 1027 46.1
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 4.0e-188 662.9 437 76.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 7.5e-187 658.7 1017 41.5
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.5e-182 644.4 399 79.4
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 4.0e-180 636.3 386 84.5
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-172 610.5 481 67.2
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 4.0e-172 609.8 454 69.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.5e-171 607.8 511 61.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 8.7e-167 592.0 1038 37.9
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.9e-162 576.2 412 69.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 1.9e-145 521.2 509 58.5
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.7e-141 506.9 382 69.4
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-139 501.5 367 70.3
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-139 501.5 367 70.3
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.9e-137 494.6 566 52.5
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 5.5e-137 493.0 322 75.8
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-135 486.5 372 69.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 3.8e-130 470.3 586 47.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.9e-129 468.0 655 44.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.5e-118 431.8 1077 31.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.3e-117 428.7 275 78.2
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.3e-109 399.8 279 74.9
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.4e-108 398.7 290 69.0
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.0e-91 341.7 195 86.7
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 5.7e-86 323.6 395 49.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.9e-85 320.5 517 42.0
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.3e-82 311.6 507 36.7
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.5e-81 308.1 183 84.2
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.5e-73 282.3 420 45.7
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-67 260.4 228 64.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.1e-63 249.6 135 89.6
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-60 238.8 221 62.0
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 3.9e-58 231.1 138 82.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-57 228.4 308 46.4
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 3.5e-51 208.0 165 68.5
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 7.8e-51 206.8 143 76.2
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.0e-50 206.5 127 82.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 6.4e-45 187.2 201 51.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 3.2e-44 184.9 191 49.7
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.9e-37 161.8 176 55.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-34 152.9 121 66.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 8.7e-34 150.2 251 41.8
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.8e-31 142.5 91 80.2
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.5e-30 139.4 265 37.4
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.1e-25 123.2 88 65.9
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.1e-15 90.1 65 67.7
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.7e-14 84.0 55 78.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.3e-13 83.2 72 52.8
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 1.4e-12 79.7 62 62.9
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.5e-09 69.7 49 65.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.4e-09 68.2 69 44.9


User provided reference genes

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