Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 2407.9 1201 100.0
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 2033.8 1202 83.5
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 2029.6 1202 82.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 2028.8 1202 82.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 2003.8 1197 81.5
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1983.0 1201 81.3
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1931.8 1202 79.0
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1877.8 1170 78.3
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1870.5 1194 75.5
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1867.0 1201 76.1
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1862.4 1200 75.7
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1844.7 1201 75.3
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1844.3 1202 75.7
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1842.8 1201 75.3
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1842.0 1203 74.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1837.8 1178 75.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1835.5 1203 74.8
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1829.3 1201 74.6
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1826.6 1195 74.6
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1821.6 1196 74.9
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1821.2 1241 73.0
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1819.7 1202 74.5
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1813.9 1203 73.0
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1807.7 1182 74.5
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1804.3 1198 73.8
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1803.5 1198 73.6
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1801.2 1207 73.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1797.3 1194 73.9
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1793.9 1199 73.7
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1793.5 1209 73.1
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1781.5 1203 73.4
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1775.8 1183 73.1
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1769.6 1208 72.1
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1769.6 1199 71.6
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1766.5 1195 72.5
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1763.8 1199 71.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1760.7 1201 71.9
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1758.8 1172 73.4
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1758.0 1199 71.0
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1757.7 1201 71.7
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1757.3 1199 70.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1756.1 1201 71.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1753.0 1204 71.5
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1753.0 1199 70.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1750.3 1202 70.9
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1748.0 1202 71.0
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1746.9 1195 71.3
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1746.5 1176 72.5
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1743.4 1197 71.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1743.0 1201 70.9
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1741.5 1201 70.6
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1734.5 1217 70.1
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1733.8 1201 70.5
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1731.1 1228 68.9
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1728.0 1191 70.0
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1725.3 1204 70.3
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1724.9 1208 69.5
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1721.4 1193 70.2
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1720.3 1201 69.9
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1718.0 1196 69.4
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1716.4 1311 66.8
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1710.3 1268 67.4
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1708.3 1154 71.8
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1704.5 1236 67.3
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1704.5 1189 69.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1703.3 1203 68.8
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1700.3 1195 69.5
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1693.3 1197 69.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1682.9 1205 68.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1679.8 1202 69.2
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1674.4 1024 79.7
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1662.1 1202 68.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1253 65.4
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1652.1 1131 70.6
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1644.8 1192 67.0
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1640.2 1196 67.3
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1639.4 1202 67.3
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1637.5 969 83.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1632.1 1201 66.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1627.8 1205 66.6
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1627.8 1196 66.5
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1196 66.6
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1621.3 1196 66.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1617.1 1198 66.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1616.3 1205 66.5
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1207 65.8
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1610.1 1229 65.4
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1607.8 1197 65.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1606.3 1236 64.0
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1603.6 1272 64.8
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1596.6 1022 76.6
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1570.8 1196 63.7
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1551.2 1205 64.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1520.0 986 76.8
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1196 64.6
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1482.6 1187 61.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1477.2 1200 61.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1475.7 1193 60.4
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1385.5 1201 60.8
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1300.4 1207 57.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1272.7 1221 54.3
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1259.6 1210 52.6
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1249.2 1217 55.0
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1248.4 1209 52.3
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1206.4 1172 50.8
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1205.3 831 70.6
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1154.8 855 68.7
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 0.0e+00 1139.0 716 78.8
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.8e-304 1049.7 711 72.2
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.9e-303 1046.2 819 64.3
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.3e-288 996.1 1178 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.4e-266 923.7 1123 44.3
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.2e-244 850.9 1099 42.7
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 6.8e-240 835.1 754 59.7
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.1e-237 826.2 567 73.9
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 4.4e-231 805.8 584 68.2
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.0e-225 785.0 492 78.0
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.1e-221 772.7 493 77.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.0e-163 582.0 386 73.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.0e-154 551.2 411 67.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 7.0e-144 516.2 592 50.2
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.4e-136 491.1 717 40.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.1e-99 367.9 259 68.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.1e-92 345.1 375 49.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 6.4e-81 307.0 179 86.0
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 5.6e-77 293.9 274 56.6
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.2e-66 259.6 289 46.7
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 4.2e-64 251.1 202 64.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 3.3e-61 241.5 308 43.2
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 9.7e-53 213.4 233 50.6
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.7e-52 211.5 140 75.7
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.5e-32 145.6 161 49.7
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.3e-29 135.2 158 50.0
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.8e-22 112.8 72 69.4
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 2.0e-18 99.4 201 35.3
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 5.0e-17 94.7 64 71.9
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 4.9e-12 78.2 53 62.3
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 8.3e-12 77.4 128 35.2
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.1e-11 77.0 47 78.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.4e-11 76.6 98 48.0
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.6e-10 73.2 59 64.4
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 2.0e-10 72.8 94 45.7
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 7.7e-10 70.9 64 56.2
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 8.9e-06 57.4 49 51.0


User provided reference genes

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