Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 7.3e-80 300.4 146 100.0
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 2.7e-42 175.6 131 67.2
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 5.5e-35 151.4 114 64.0
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 5.5e-35 151.4 114 64.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 9.4e-35 150.6 124 59.7
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 8.8e-33 144.1 128 59.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.7e-31 139.8 129 58.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.8e-31 138.3 128 59.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 8.2e-31 137.5 126 58.7
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.1e-30 137.1 132 53.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.8e-30 136.3 132 53.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.4e-30 136.0 130 53.8
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.1e-30 135.6 132 52.3
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.1e-30 135.2 132 52.3
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 5.3e-30 134.8 126 57.9
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-30 134.8 132 52.3
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.9e-30 134.4 122 59.8
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.9e-30 134.4 131 55.7
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 9.1e-30 134.0 133 55.6
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.5e-29 133.3 131 55.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-29 132.9 134 51.5
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-29 132.5 132 52.3
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-29 132.5 131 55.0
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 4.5e-29 131.7 127 53.5
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.5e-29 131.7 131 51.9
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 5.9e-29 131.3 131 51.1
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 5.9e-29 131.3 127 55.1
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 7.7e-29 131.0 119 57.1
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.7e-29 131.0 132 54.5
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.2e-28 129.4 133 54.1
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 5.0e-28 128.3 134 50.7
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 8.5e-28 127.5 127 55.1
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.5e-27 125.9 128 51.6
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 3.2e-27 125.6 128 52.3
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 4.2e-27 125.2 136 47.8
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 5.5e-27 124.8 132 53.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.2e-26 123.6 128 51.6
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 2.1e-26 122.9 130 47.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 3.6e-26 122.1 130 50.0
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 4.7e-26 121.7 128 51.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 7.9e-26 120.9 107 54.2
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 7.9e-26 120.9 120 50.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.0e-25 120.6 118 52.5
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.3e-25 119.4 139 48.2
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 3.0e-25 119.0 126 52.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 6.7e-25 117.9 132 49.2
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 1.1e-24 117.1 115 52.2
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.5e-24 116.7 124 52.4
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 2.6e-24 115.9 130 50.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.4e-24 115.2 133 42.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 4.4e-24 115.2 129 41.9
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.7e-24 114.8 131 48.9
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 7.4e-24 114.4 130 48.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 9.7e-24 114.0 130 46.9
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.7e-23 113.2 123 50.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.2e-23 112.8 128 42.2
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.8e-23 112.5 129 46.5
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 3.7e-23 112.1 126 42.9
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 4.8e-23 111.7 137 45.3
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 8.2e-23 110.9 129 40.3
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 8.2e-23 110.9 129 40.3
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 8.2e-23 110.9 107 52.3
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 8.2e-23 110.9 133 45.9
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.1e-22 110.5 119 42.0
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.4e-22 110.2 137 42.3
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.4e-22 110.2 129 41.9
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.4e-22 110.2 120 50.0
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 3.1e-22 109.0 127 46.5
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 4.1e-22 108.6 130 41.5
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 4.1e-22 108.6 123 48.8
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 4.1e-22 108.6 123 48.8
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 5.3e-22 108.2 131 44.3
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.0e-22 107.8 136 41.9
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 7.0e-22 107.8 130 46.9
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 9.1e-22 107.5 124 43.5
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 9.1e-22 107.5 134 40.3
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 9.1e-22 107.5 134 40.3
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 9.1e-22 107.5 134 40.3
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 5.9e-21 104.8 137 40.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 5.9e-21 104.8 125 41.6
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 5.9e-21 104.8 123 45.5
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.7e-21 104.4 131 45.8
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 7.7e-21 104.4 129 41.1
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.0e-20 104.0 131 44.3
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.7e-20 103.2 146 42.5
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 2.9e-20 102.4 118 49.2
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 8.5e-20 100.9 132 41.7
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-19 100.5 132 43.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-19 100.1 125 39.2
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-19 99.8 136 40.4
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.9e-19 99.8 136 40.4
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.9e-19 99.8 136 40.4
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.9e-19 99.8 136 40.4
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.5e-19 99.4 124 40.3
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 5.5e-19 98.2 100 52.0
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 7.2e-19 97.8 125 40.8
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.2e-19 97.8 129 44.2
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 9.4e-19 97.4 136 39.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 9.4e-19 97.4 112 44.6
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.2e-18 97.1 124 41.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.6e-18 96.7 156 37.2
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 4.7e-18 95.1 126 46.8
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 6.1e-18 94.7 129 45.7
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 6.1e-18 94.7 125 43.2
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 2.3e-17 92.8 127 40.2
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.3e-17 92.8 129 44.2
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 3.0e-17 92.4 116 44.8
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 3.9e-17 92.0 118 44.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 5.2e-17 91.7 127 39.4
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.7e-17 91.3 130 40.0
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 8.8e-17 90.9 133 39.1
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 8.8e-17 90.9 119 41.2
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.6e-16 89.4 133 37.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.3e-16 89.0 131 39.7
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 4.4e-16 88.6 86 55.8
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 9.7e-16 87.4 134 37.3
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.7e-15 86.7 132 38.6
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 2.2e-15 86.3 123 36.6
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 6.3e-15 84.7 129 39.5
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 1.6e-13 80.1 130 40.0
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 2.6e-13 79.3 105 39.0
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 3.5e-13 79.0 126 41.3
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 3.5e-13 79.0 101 45.5
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 4.5e-13 78.6 129 38.0
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.9e-12 75.9 124 37.9
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 9.4e-11 70.9 103 37.9
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 1.6e-10 70.1 116 37.9
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.6e-10 70.1 72 48.6
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-10 69.7 111 37.8
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 8.0e-10 67.8 87 46.0
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.0e-09 67.4 74 50.0
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 2.3e-09 66.2 61 57.4
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.0e-09 65.9 51 64.7
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.2e-09 65.1 67 59.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.2e-08 63.9 107 36.4
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 2.0e-08 63.2 71 47.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.3e-08 62.4 119 30.3
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.3e-07 60.5 53 58.5
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 4.8e-07 58.5 63 38.1
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 4.8e-07 58.5 63 38.1
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 4.8e-07 58.5 92 40.2
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 8.2e-07 57.8 46 60.9
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 8.2e-07 57.8 126 32.5
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.1e-06 57.4 125 32.0
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 2.4e-06 56.2 134 32.8
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.4e-06 56.2 69 50.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 3.1e-06 55.8 118 31.4
Dinv35597 Davidia involucrata HOM05D022761 ORTHO05D022494 9.1e-06 54.3 124 26.6
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 9.1e-06 54.3 120 26.7
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 9.1e-06 54.3 120 26.7


User provided reference genes

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