Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 6.9e-139 497.3 249 100.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 6.0e-50 201.8 135 77.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.8e-46 190.3 109 91.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.5e-42 176.0 109 85.3
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.8e-41 173.7 109 83.5
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.8e-41 173.7 109 83.5
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.5e-40 170.6 109 79.8
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.5e-40 170.6 109 80.7
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.9e-40 170.2 109 81.7
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.9e-40 170.2 110 80.9
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 2.5e-40 169.9 109 82.6
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.5e-40 169.9 109 81.7
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.5e-40 169.9 109 81.7
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 3.3e-40 169.5 109 79.8
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 3.3e-40 169.5 109 81.7
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 4.3e-40 169.1 109 79.8
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 5.7e-40 168.7 106 81.1
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 7.4e-40 168.3 109 81.7
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.3e-39 167.5 106 82.1
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.3e-39 167.5 109 77.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.3e-39 167.5 106 82.1
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-39 167.2 109 78.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-39 167.2 109 78.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.6e-39 167.2 106 81.1
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 6.3e-39 165.2 105 81.0
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 6.3e-39 165.2 109 78.0
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 8.2e-39 164.9 108 76.9
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 8.2e-39 164.9 108 76.9
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.1e-38 164.5 106 79.2
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.1e-38 164.5 109 78.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.4e-38 164.1 106 80.2
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.4e-38 164.1 106 80.2
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.8e-38 163.7 109 78.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.8e-38 163.7 106 79.2
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.4e-38 163.3 106 78.3
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.1e-38 162.9 106 77.4
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 3.1e-38 162.9 106 78.3
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 3.1e-38 162.9 108 75.9
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 4.1e-38 162.5 106 78.3
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 4.1e-38 162.5 109 76.1
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.1e-38 162.5 109 75.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 5.3e-38 162.2 109 75.2
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 5.3e-38 162.2 109 77.1
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 5.3e-38 162.2 109 77.1
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 5.3e-38 162.2 109 76.1
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 6.9e-38 161.8 108 76.9
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 6.9e-38 161.8 109 78.9
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 6.9e-38 161.8 109 78.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 6.9e-38 161.8 109 76.1
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 9.0e-38 161.4 109 75.2
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 9.0e-38 161.4 109 76.1
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.2e-37 161.0 106 78.3
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.2e-37 161.0 106 79.2
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.2e-37 161.0 106 79.2
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 1.2e-37 161.0 106 79.2
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 1.2e-37 161.0 109 75.2
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.5e-37 160.6 109 77.1
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.5e-37 160.6 109 74.3
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-37 160.6 109 74.3
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-37 160.6 109 74.3
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.5e-37 160.6 109 78.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.0e-37 160.2 106 75.5
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.6e-37 159.8 109 73.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.6e-37 159.8 105 77.1
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.4e-37 159.5 106 78.3
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 3.4e-37 159.5 108 75.0
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.4e-37 159.5 106 75.5
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.4e-37 159.5 106 75.5
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.4e-37 159.5 108 75.0
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 3.4e-37 159.5 106 75.5
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 4.5e-37 159.1 109 77.1
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 4.5e-37 159.1 109 75.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.5e-37 159.1 109 75.2
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 5.9e-37 158.7 109 74.3
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 5.9e-37 158.7 109 76.1
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 5.9e-37 158.7 109 75.2
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 7.6e-37 158.3 106 77.4
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 7.6e-37 158.3 109 76.1
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 7.6e-37 158.3 107 74.8
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 7.6e-37 158.3 106 76.4
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.0e-36 157.9 105 76.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.0e-36 157.9 109 74.3
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.3e-36 157.5 106 76.4
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.3e-36 157.5 106 76.4
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.3e-36 157.5 112 73.2
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.3e-36 157.5 109 74.3
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.7e-36 157.1 109 73.4
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.7e-36 157.1 105 76.2
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.7e-36 157.1 109 75.2
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 1.7e-36 157.1 109 72.5
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.7e-36 157.1 109 77.1
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.2e-36 156.8 108 73.1
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 3.8e-36 156.0 109 73.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 3.8e-36 156.0 106 75.5
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 5.0e-36 155.6 109 71.6
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 5.0e-36 155.6 106 75.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 5.0e-36 155.6 106 75.5
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 5.0e-36 155.6 109 72.5
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 6.5e-36 155.2 106 75.5
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 8.5e-36 154.8 109 74.3
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 8.5e-36 154.8 109 71.6
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.1e-35 154.5 109 74.3
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.4e-35 154.1 109 70.6
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.4e-35 154.1 109 75.2
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.9e-35 153.7 109 74.3
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.9e-35 153.7 107 72.0
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.9e-35 153.7 109 73.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.5e-35 153.3 109 73.4
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 2.5e-35 153.3 106 73.6
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.5e-35 153.3 115 70.4
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 3.2e-35 152.9 109 74.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 4.2e-35 152.5 106 74.5
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 4.2e-35 152.5 106 74.5
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.2e-35 152.5 104 73.1
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 4.2e-35 152.5 106 73.6
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 5.5e-35 152.1 102 73.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.6e-34 150.6 109 69.7
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.6e-34 149.4 109 72.5
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.6e-34 149.1 109 72.5
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 7.9e-34 148.3 132 62.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.4e-33 147.5 109 70.6
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.3e-33 146.7 105 73.3
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.0e-33 146.4 104 75.0
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.9e-33 146.0 109 70.6
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 5.1e-33 145.6 111 70.3
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 6.7e-33 145.2 108 69.4
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 6.7e-33 145.2 106 70.8
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 7.4e-32 141.7 108 67.6
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 9.7e-32 141.4 108 68.5
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 9.7e-32 141.4 108 68.5
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 1.2e-29 134.4 117 65.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.6e-29 133.3 136 56.6
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 4.5e-29 132.5 137 56.2
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.3e-28 131.0 115 60.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.7e-26 122.5 115 64.3
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 6.7e-25 118.6 76 80.3
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 6.7e-25 118.6 102 59.8
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.6e-24 116.7 82 74.4
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.3e-24 116.3 75 78.7
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 7.4e-24 115.2 76 77.6
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.7e-23 114.0 105 57.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.8e-23 113.2 86 65.1
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.8e-23 112.5 76 75.0
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.7e-21 105.1 99 57.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.7e-20 104.0 75 70.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.5e-19 99.0 69 75.4
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.2e-18 97.8 109 49.5
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.1e-18 97.1 108 47.2
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.0e-17 93.2 147 41.5
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.0e-17 93.2 147 42.9
vmacro18397 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 2.6e-16 90.1 131 42.7
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.7e-15 87.4 70 64.3
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 2.8e-15 86.7 132 41.7
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.4e-14 84.3 157 38.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 1.4e-14 84.3 84 47.6
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.1e-14 83.2 101 50.5
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.0e-14 82.0 117 42.7
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.3e-12 77.8 100 49.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.7e-12 77.4 83 47.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 6.1e-10 68.9 82 52.4
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 1.0e-09 68.2 63 55.6
Dinv18296 Davidia involucrata HOM05D004007 ORTHO05D184098 2.6e-08 63.5 31 90.3
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.2e-07 60.5 41 70.7


User provided reference genes

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