Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07920 Davidia involucrata HOM05D001717 ORTHO05D183643 4.6e-38 160.6 75 100.0
Dinv28014 Davidia involucrata HOM05D001717 ORTHO05D180398 2.4e-26 121.7 63 92.1
Dinv36788 Davidia involucrata HOM05D001717 ORTHO05D007217 2.8e-11 71.6 43 76.7
Nn8g38788 Nelumbo nucifera HOM05D001717 ORTHO05D007217 1.4e-10 69.3 43 74.4
CANSAT37G0002 Cannabis sativa HOM05D001717 ORTHO05D007217 1.8e-10 68.9 43 74.4
Dinv42343 Davidia involucrata HOM05D001717 ORTHO05D007217 1.8e-10 68.9 43 74.4
Aqoxy7G01155 Aquilegia oxysepala HOM05D001717 ORTHO05D007217 4.1e-10 67.8 43 72.1
PGSC0003DMG400000333 Solanum tuberosum HOM05D001717 ORTHO05D007217 4.1e-10 67.8 43 72.1
CDE05G1519 Ceratophyllum demersum HOM05D001717 ORTHO05D007217 5.3e-10 67.4 43 72.1
Ciclev10008410m.g Citrus clementina HOM05D001717 ORTHO05D007217 5.3e-10 67.4 43 72.1
Oeu051301.2 Olea europaea HOM05D001717 ORTHO05D007217 5.3e-10 67.4 43 72.1
Actinidia38458 Actinidia chinensis HOM05D001717 ORTHO05D007217 7.0e-10 67.0 43 72.1
Hma1.2p1_0672F.1_g200970 Hydrangea macrophylla HOM05D001717 ORTHO05D007217 7.0e-10 67.0 43 72.1
Duzib187G0409 Durio zibethinus HOM05D001717 ORTHO05D007217 9.1e-10 66.6 48 66.7
Actinidia29912 Actinidia chinensis HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 67.4
Cpa.g.sc28.134 Carica papaya HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 69.8
CiPaw.04G147700 Carya illinoinensis HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 69.8
Haze_25942 Corylus avellana HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 69.8
Lj4A290G39 Lonicera japonica HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 69.8
QL02p062060 Quercus lobata HOM05D001717 ORTHO05D007217 1.2e-09 66.2 43 69.8
CAN.G1583.7 Capsicum annuum HOM05D001717 ORTHO05D007217 1.6e-09 65.9 46 67.4
Cc06_g11680 Coffea canephora HOM05D001717 ORTHO05D007217 1.6e-09 65.9 43 72.1
Peaxi162Scf00498g00430 Petunia axillaris HOM05D001717 ORTHO05D007217 1.6e-09 65.9 43 72.1
TWI34G1733 Tripterygium wilfordii HOM05D001717 ORTHO05D007217 1.6e-09 65.9 43 69.8
Atru.chr7.1632 Acer truncatum HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 69.8
MSTRG.26445 Avicennia marina HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 69.8
COL.COLO4_18171 Corchorus olitorius HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 69.8
DCAR_028276 Daucus carota HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 69.8
Lj6g0021332 Lotus japonicus HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 69.8
SGA_v2.0_scaffold21G09418 Striga asiatica HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 72.1
VMungo1309G2997 Vigna mungo HOM05D001717 ORTHO05D007217 2.0e-09 65.5 43 67.4
Rhsim03G0231100 Rhododendron simsii HOM05D001717 ORTHO05D007217 2.7e-09 65.1 43 69.8
Sabra06G0116300 Salix brachista HOM05D001717 ORTHO05D007217 2.7e-09 65.1 43 69.8
TPR.G29491 Trifolium pratense HOM05D001717 ORTHO05D007217 2.7e-09 65.1 43 67.4
GSVIVG01015169001 Vitis vinifera HOM05D001717 ORTHO05D007217 2.7e-09 65.1 43 69.8
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 67.4
Lalb_Chr08g0232411 Lupinus albus HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 65.1
Nitab4.5_0002642g0140 Nicotiana tabacum HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 69.8
Nitab4.5_0002824g0130 Nicotiana tabacum HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 69.8
Solyc12g008980.3 Solanum lycopersicum HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 67.4
Sopen12g003910 Solanum pennellii HOM05D001717 ORTHO05D007217 3.5e-09 64.7 43 67.4
Aa31LG3G12920 Aethionema arabicum HOM05D001717 ORTHO05D007217 4.5e-09 64.3 43 69.8
A03p13030 Brassica napus HOM05D001717 ORTHO05D007217 4.5e-09 64.3 64 53.1
ClCG11G001670 Citrullus lanatus HOM05D001717 ORTHO05D007217 4.5e-09 64.3 43 67.4
MELO3C004633.2 Cucumis melo HOM05D001717 ORTHO05D007217 4.5e-09 64.3 43 67.4
CsaV3_2G001370 Cucumis sativus L. HOM05D001717 ORTHO05D007217 4.5e-09 64.3 43 67.4
Sed0013443 Sechium edule HOM05D001717 ORTHO05D007217 4.5e-09 64.3 43 67.4
arahy.Tifrunner.gnm1.ann1.1PI95V Arachis hypogaea HOM05D001717 ORTHO05D007217 5.9e-09 63.9 43 67.4
arahy.Tifrunner.gnm1.ann1.HJX0E8 Arachis hypogaea HOM05D001717 ORTHO05D007217 5.9e-09 63.9 43 67.4
CSS0031227 Camellia sinensis var. sinensis HOM05D001717 ORTHO05D007217 5.9e-09 63.9 43 67.4
Glyma.09G066200 Glycine max HOM05D001717 ORTHO05D007217 5.9e-09 63.9 43 67.4
TAR626G1800 Trochodendron aralioides HOM05D001717 ORTHO05D007217 5.9e-09 63.9 43 69.8
Eucgr.C03415 Eucalyptus grandis HOM05D001717 ORTHO05D007217 7.7e-09 63.5 43 65.1
Manes.16G099600 Manihot esculenta HOM05D001717 ORTHO05D007217 7.7e-09 63.5 37 78.4
PGR044G0216 Punica granatum HOM05D001717 ORTHO05D007217 7.7e-09 63.5 43 65.1
Gohir.A05G031300 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.0e-08 63.2 43 67.4
Gohir.D05G032700 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.0e-08 63.2 43 67.4
Gorai.009G032900 Gossypium raimondii HOM05D001717 ORTHO05D007217 1.0e-08 63.2 43 67.4
Phvul.009G230300 Phaseolus vulgaris HOM05D001717 ORTHO05D007217 1.0e-08 63.2 43 62.8
unitig_899.g15176 Utricularia gibba HOM05D001717 ORTHO05D007217 1.0e-08 63.2 43 67.4
BcaB05g22312 Brassica carinata HOM05D001717 ORTHO05D007217 1.7e-08 62.4 64 51.6
BcaC01g06460 Brassica carinata HOM05D001717 ORTHO05D007217 1.7e-08 62.4 64 51.6
C03p15210 Brassica napus HOM05D001717 ORTHO05D007217 1.7e-08 62.4 64 51.6
BraA03t10613Z Brassica rapa HOM05D001717 ORTHO05D007217 1.7e-08 62.4 64 51.6
HanXRQChr03g0060261 Helianthus annuus HOM05D001717 ORTHO05D007217 1.7e-08 62.4 43 69.8
Thecc.09G084800 Theobroma cacao HOM05D001717 ORTHO05D007217 1.7e-08 62.4 43 67.4
AL8G32930 Arabidopsis lyrata HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 67.4
AUR62033926 Chenopodium quinoa HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 60.5
Ca_13129_v3 Cicer arietinum L. HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 65.1
Thhalv10013234m.g Eutrema salsugineum HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 67.4
Psat1g140400 Pisum sativum HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 65.1
SalBow1G4112 Salvia bowleyana HOM05D001717 ORTHO05D007217 2.2e-08 62.0 43 69.8
BcaC04g20021 Brassica carinata HOM05D001717 ORTHO05D007217 2.9e-08 61.6 64 53.1
A10p14350 Brassica napus HOM05D001717 ORTHO05D007217 2.9e-08 61.6 64 53.1
BolC9t57717H Brassica oleracea HOM05D001717 ORTHO05D007217 2.9e-08 61.6 64 53.1
BraA10t43526Z Brassica rapa HOM05D001717 ORTHO05D007217 2.9e-08 61.6 64 53.1
AUR62029030 Chenopodium quinoa HOM05D001717 ORTHO05D007217 2.9e-08 61.6 43 60.5
Potri.006G147300 Populus trichocarpa HOM05D001717 ORTHO05D007217 2.9e-08 61.6 43 65.1
Hund08694 Selenicereus undatus HOM05D001717 ORTHO05D007217 2.9e-08 61.6 43 65.1
Ah.09g228040 Amaranthus hybridus HOM05D001717 ORTHO05D007217 3.8e-08 61.2 43 62.8
Migut.L01523 Erythranthe guttata HOM05D001717 ORTHO05D007217 3.8e-08 61.2 43 65.1
Sp6g18740 Schrenkiella parvula HOM05D001717 ORTHO05D007217 3.8e-08 61.2 43 67.4
Sc18g0002290 Simmondsia chinensis HOM05D001717 ORTHO05D007217 3.8e-08 61.2 43 65.1
AT5G57030 Arabidopsis thaliana HOM05D001717 ORTHO05D007217 5.0e-08 60.8 43 67.4
C09p48690 Brassica napus HOM05D001717 ORTHO05D007217 5.0e-08 60.8 64 53.1
BolC3t13962H Brassica oleracea HOM05D001717 ORTHO05D007217 5.0e-08 60.8 64 50.0
Carub.0008s1753 Capsella rubella HOM05D001717 ORTHO05D007217 5.0e-08 60.8 43 67.4
Glyma.15G172200 Glycine max HOM05D001717 ORTHO05D007217 5.0e-08 60.8 43 62.8
Medtr2g040060 Medicago truncatula HOM05D001717 ORTHO05D007217 5.0e-08 60.8 43 65.1
THA.LOC104811752 Tarenaya hassleriana HOM05D001717 ORTHO05D007217 5.0e-08 60.8 43 67.4
BcaB01g04439 Brassica carinata HOM05D001717 ORTHO05D007217 6.5e-08 60.5 64 50.0
BcaB08g36016 Brassica carinata HOM05D001717 ORTHO05D007217 6.5e-08 60.5 43 65.1
BcaB08g36018 Brassica carinata HOM05D001717 ORTHO05D007217 6.5e-08 60.5 64 50.0
BcaB08g36021 Brassica carinata HOM05D001717 ORTHO05D007217 6.5e-08 60.5 64 50.0
BcaB08g36024 Brassica carinata HOM05D001717 ORTHO05D007217 6.5e-08 60.5 64 50.0
vmacro06304 Vaccinium macrocarpon HOM05D001717 ORTHO05D007217 6.5e-08 60.5 41 68.3
ECA240G2539 Erigeron canadensis HOM05D001717 ORTHO05D007217 8.5e-08 60.1 43 67.4
Gohir.A07G012400 Gossypium hirsutum HOM05D001717 ORTHO05D007217 8.5e-08 60.1 43 65.1
Gorai.001G012900 Gossypium raimondii HOM05D001717 ORTHO05D007217 8.5e-08 60.1 43 65.1
ATR0716G023 Amborella trichopoda HOM05D001717 ORTHO05D007217 1.5e-07 59.3 42 61.9
CARHR270780 Cardamine hirsuta HOM05D001717 ORTHO05D007217 1.5e-07 59.3 43 65.1
EL10Ac8g19172 Beta vulgaris HOM05D001717 ORTHO05D007217 1.9e-07 58.9 43 58.1
CAN.G276.10 Capsicum annuum HOM05D001717 ORTHO05D007217 1.9e-07 58.9 39 66.7
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.9e-07 58.9 43 62.8
PSO063G2279 Papaver somniferum HOM05D001717 ORTHO05D007217 4.2e-07 57.8 43 62.8
MD02G1083500 Malus domestica HOM05D001717 ORTHO05D007217 5.5e-07 57.4 44 63.6
PSO832G4340 Papaver somniferum HOM05D001717 ORTHO05D007217 5.5e-07 57.4 43 62.8
RcHm_v2.0_Chr2g0093831 Rosa chinensis HOM05D001717 ORTHO05D007217 7.2e-07 57.0 44 63.6
Zm00001eb357090 Zea mays HOM05D001717 ORTHO05D007217 7.2e-07 57.0 43 60.5
Prupe.7G205600 Prunus persica HOM05D001717 ORTHO05D007217 9.4e-07 56.6 44 65.9
FAN23G2221 Fragaria x ananassa HOM05D001717 ORTHO05D007217 1.6e-06 55.8 44 61.4
FAN26G1636 Fragaria x ananassa HOM05D001717 ORTHO05D007217 1.6e-06 55.8 44 61.4
FAN26G2680 Fragaria x ananassa HOM05D001717 ORTHO05D007217 1.6e-06 55.8 44 61.4
Os01g0581300 Oryza sativa ssp. japonica HOM05D001717 ORTHO05D007217 1.6e-06 55.8 43 58.1
SEGI_06334 Sequoiadendron giganteum HOM05D001717 ORTHO05D007217 1.6e-06 55.8 47 59.6
Mapoly0057s0089 Marchantia polymorpha HOM05D001717 ORTHO05D007217 2.1e-06 55.5 42 52.4
FvH4_1g07950 Fragaria vesca HOM05D001717 ORTHO05D007217 6.1e-06 53.9 44 59.1
FAN19G0647 Fragaria x ananassa HOM05D001717 ORTHO05D007217 6.1e-06 53.9 44 59.1
FAN28G1754 Fragaria x ananassa HOM05D001717 ORTHO05D007217 6.1e-06 53.9 44 59.1
Lsat_1_v5_gn_7_34600 Lactuca sativa HOM05D001717 ORTHO05D007217 8.0e-06 53.5 44 63.6


User provided reference genes

Program Settings