Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07725 Davidia involucrata HOM05D002001 ORTHO05D006833 1.6e-35 152.1 71 100.0
Dinv10472 Davidia involucrata HOM05D002001 ORTHO05D006833 3.3e-25 117.9 61 91.8
Lj6A737G48 Lonicera japonica HOM05D002001 ORTHO05D006833 5.6e-25 117.1 61 90.2
CSS0027933 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 9.5e-25 116.3 61 90.2
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 4.7e-24 114.0 61 88.5
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 6.2e-24 113.6 61 85.2
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 8.0e-24 113.2 61 86.9
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 1.4e-23 112.5 61 88.5
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 1.8e-23 112.1 61 85.2
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 1.8e-23 112.1 61 86.9
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 2.3e-23 111.7 62 83.9
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 3.1e-23 111.3 61 86.9
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 4.0e-23 110.9 61 85.2
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 5.2e-23 110.5 61 83.6
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 5.2e-23 110.5 61 83.6
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 5.2e-23 110.5 61 85.2
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 6.8e-23 110.2 61 83.6
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 8.9e-23 109.8 61 85.2
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 8.9e-23 109.8 61 83.6
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 1.2e-22 109.4 61 80.3
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 1.2e-22 109.4 61 83.6
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 1.2e-22 109.4 61 83.6
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 1.5e-22 109.0 61 80.3
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 2.6e-22 108.2 61 83.6
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 4.4e-22 107.5 61 83.6
Hund15102 Selenicereus undatus HOM05D002001 ORTHO05D006833 4.4e-22 107.5 60 81.7
Ca_12538_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 5.8e-22 107.1 61 82.0
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 5.8e-22 107.1 61 80.3
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 1.3e-21 105.9 59 83.1
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 2.2e-21 105.1 61 80.3
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 2.2e-21 105.1 61 80.3
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 2.9e-21 104.8 59 79.7
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 2.9e-21 104.8 61 82.0
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 2.9e-21 104.8 61 82.0
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 2.9e-21 104.8 61 80.3
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 2.9e-21 104.8 61 80.3
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 3.7e-21 104.4 59 79.7
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 3.7e-21 104.4 61 80.3
Lalb_Chr10g0095691 Lupinus albus HOM05D002001 ORTHO05D006833 4.9e-21 104.0 61 78.7
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 6.4e-21 103.6 59 78.0
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 6.4e-21 103.6 61 77.0
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 8.3e-21 103.2 61 80.3
Nn4g24388 Nelumbo nucifera HOM05D002001 ORTHO05D006833 8.3e-21 103.2 58 84.5
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 1.1e-20 102.8 61 77.0
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 1.1e-20 102.8 61 80.3
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 1.1e-20 102.8 61 78.7
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 1.4e-20 102.4 61 78.7
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 1.9e-20 102.1 61 77.0
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 1.9e-20 102.1 61 77.0
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 1.9e-20 102.1 61 75.4
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 1.9e-20 102.1 64 78.1
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 1.9e-20 102.1 59 78.0
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 1.9e-20 102.1 61 75.4
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 2.4e-20 101.7 61 82.0
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 2.4e-20 101.7 64 76.6
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 3.2e-20 101.3 61 77.0
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 3.2e-20 101.3 63 77.8
Sc04g0007250 Simmondsia chinensis HOM05D002001 ORTHO05D006833 3.2e-20 101.3 61 78.7
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 4.1e-20 100.9 59 72.9
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 4.1e-20 100.9 59 72.9
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 4.1e-20 100.9 61 77.0
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 5.4e-20 100.5 59 72.9
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 5.4e-20 100.5 59 72.9
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 5.4e-20 100.5 61 77.0
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 7.0e-20 100.1 59 72.9
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 7.0e-20 100.1 59 72.9
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 9.2e-20 99.8 62 79.0
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 1.2e-19 99.4 59 76.3
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 1.2e-19 99.4 61 77.0
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 1.2e-19 99.4 61 77.0
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 1.6e-19 99.0 61 75.4
HPP92_024777 Vanilla planifolia HOM05D002001 ORTHO05D006833 1.6e-19 99.0 61 73.8
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 2.7e-19 98.2 61 75.4
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 2.7e-19 98.2 68 73.5
MBI19_g34072_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 2.7e-19 98.2 61 78.7
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 3.5e-19 97.8 61 75.4
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 3.5e-19 97.8 61 75.4
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 4.6e-19 97.4 61 73.8
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 6.0e-19 97.1 61 77.0
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 6.0e-19 97.1 61 77.0
DCAR_011517 Daucus carota HOM05D002001 ORTHO05D006833 7.8e-19 96.7 71 66.2
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 7.8e-19 96.7 62 74.2
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 1.0e-18 96.3 58 72.4
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 1.0e-18 96.3 63 76.2
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 1.0e-18 96.3 61 77.0
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 1.0e-18 96.3 61 77.0
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 1.3e-18 95.9 61 75.4
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.3e-18 95.9 61 75.4
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 2.3e-18 95.1 61 72.1
CSS0031775 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 3.0e-18 94.7 55 78.2
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 5.1e-18 94.0 61 67.2
SEGI_22125 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 6.6e-18 93.6 61 70.5
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 1.9e-17 92.0 61 65.6
Ah.16g106690 Amaranthus hybridus HOM05D002001 ORTHO05D006833 3.3e-17 91.3 70 65.7
Cc11_g07370 Coffea canephora HOM05D002001 ORTHO05D006833 3.3e-17 91.3 60 73.3
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 7.3e-17 90.1 61 63.9
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 1.1e-15 86.3 51 80.4
Zm00001eb159740 Zea mays HOM05D002001 ORTHO05D006833 3.4e-14 81.3 62 61.3
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 3.7e-13 77.8 64 59.4
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 4.9e-13 77.4 61 54.1
Oeu062637.1 Olea europaea HOM05D002001 ORTHO05D006833 2.1e-11 72.0 42 73.8
CSS0021671 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 4.6e-11 70.9 40 77.5
Cre02.g080100 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D006833 3.9e-10 67.8 59 45.8
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 2.5e-09 65.1 36 83.3
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 4.4e-06 54.3 42 54.8


User provided reference genes

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