Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07487 Davidia involucrata HOM05D001759 ORTHO05D182012 2.3e-40 168.3 79 100.0
Dinv19417 Davidia involucrata HOM05D001759 ORTHO05D002406 2.4e-08 62.0 31 87.1
Solyc01g103510.4 Solanum lycopersicum HOM05D001759 ORTHO05D002406 1.5e-07 59.3 44 56.8
unitig_61.g26384 Utricularia gibba HOM05D001759 ORTHO05D012931 7.6e-07 57.0 51 54.9
Actinidia10637 Actinidia chinensis HOM05D001759 ORTHO05D012931 1.3e-06 56.2 38 63.2
Pp3c5_27000 Physcomitrium patens HOM05D001759 ORTHO05D002406 2.2e-06 55.5 34 70.6
Pp3c5_27030 Physcomitrium patens HOM05D001759 ORTHO05D002406 2.2e-06 55.5 34 70.6
Pp3c6_2960 Physcomitrium patens HOM05D001759 ORTHO05D002406 2.2e-06 55.5 34 70.6
SGA_v2.0_scaffold100G29535 Striga asiatica HOM05D001759 ORTHO05D002406 2.2e-06 55.5 41 61.0
Actinidia26171 Actinidia chinensis HOM05D001759 ORTHO05D012931 2.9e-06 55.1 35 68.6
HanXRQChr10g0278811 Helianthus annuus HOM05D001759 ORTHO05D002406 2.9e-06 55.1 37 64.9
Pp3c10_25460 Physcomitrium patens HOM05D001759 ORTHO05D002406 2.9e-06 55.1 34 70.6
Cc02_g22160 Coffea canephora HOM05D001759 ORTHO05D002406 3.8e-06 54.7 34 67.6
Nitab4.5_0003071g0030 Nicotiana tabacum HOM05D001759 ORTHO05D002406 3.8e-06 54.7 40 60.0
vmacro19864 Vaccinium macrocarpon HOM05D001759 ORTHO05D000039 3.8e-06 54.7 35 68.6
FAN09G0312 Fragaria x ananassa HOM05D001759 ORTHO05D002406 4.9e-06 54.3 33 69.7
Oeu044830.1 Olea europaea HOM05D001759 ORTHO05D012931 4.9e-06 54.3 33 72.7
Cfa004485 Carpinus fangiana HOM05D001759 ORTHO05D002406 6.4e-06 53.9 34 67.6
Haze_10041 Corylus avellana HOM05D001759 ORTHO05D002406 6.4e-06 53.9 34 67.6
SalBow6G1535 Salvia bowleyana HOM05D001759 ORTHO05D002406 6.4e-06 53.9 34 67.6
SalBow6G2513 Salvia bowleyana HOM05D001759 ORTHO05D002406 6.4e-06 53.9 34 67.6
Atru.chr1.865 Acer truncatum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Atru.chr13.2067 Acer truncatum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Atru.chr6.520 Acer truncatum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Actinidia01607 Actinidia chinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
arahy.Tifrunner.gnm1.ann1.B6RQCR Arachis hypogaea HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
arahy.Tifrunner.gnm1.ann1.QAA1TN Arachis hypogaea HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MSTRG.16543 Avicennia marina HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MSTRG.27835 Avicennia marina HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MSTRG.5245 Avicennia marina HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
EL10Ac6g15235 Beta vulgaris HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CSS0043418 Camellia sinensis var. sinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CSS0050022 Camellia sinensis var. sinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CANSAT25G3130 Cannabis sativa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CAN.G1352.12 Capsicum annuum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CAN.G855.7 Capsicum annuum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CiPaw.01G049700 Carya illinoinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CiPaw.15G014600 Carya illinoinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CiPaw.16G010000 Carya illinoinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
AUR62003639 Chenopodium quinoa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
AUR62017949 Chenopodium quinoa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Ca_10676_v3 Cicer arietinum L. HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
ClCG08G002050 Citrullus lanatus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Ciclev10001454m.g Citrus clementina HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
COL.COLO4_29878 Corchorus olitorius HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Haze_17783 Corylus avellana HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
CsaV3_6G002550 Cucumis sativus L. HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
DCAR_006669 Daucus carota HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
DCAR_014443 Daucus carota HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Dinv25883 Davidia involucrata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Duzib116G0451 Durio zibethinus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
ECA236G3898 Erigeron canadensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
ECA246G1083 Erigeron canadensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Migut.B00656 Erythranthe guttata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Migut.B00657 Erythranthe guttata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Migut.N00841 Erythranthe guttata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Migut.O00633 Erythranthe guttata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Eucgr.F02696 Eucalyptus grandis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Eucgr.F04208 Eucalyptus grandis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
FvH4_2g13300 Fragaria vesca HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
FAN15G1497 Fragaria x ananassa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Glyma.10G223450 Glycine max HOM05D000074 ORTHO05D000220 8.4e-06 53.5 34 67.6
Glyma.20G168100 Glycine max HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
HanXRQChr11g0320281 Helianthus annuus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
HanXRQChr11g0329731 Helianthus annuus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Hma1.2p1_0081F.1_g042350 Hydrangea macrophylla HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Hma1.2p1_0240F.1_g100380 Hydrangea macrophylla HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lsat_1_v5_gn_7_75821 Lactuca sativa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lsat_1_v5_gn_9_41900 Lactuca sativa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lj4A699T46 Lonicera japonica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lj7A375T62 Lonicera japonica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lalb_Chr06g0161671 Lupinus albus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Lalb_Chr07g0189221 Lupinus albus HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MD04G1044600 Malus domestica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MD08G1242000 Malus domestica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
MD13G1271300 Malus domestica HOM05D001759 ORTHO05D247536 8.4e-06 53.5 34 67.6
MD15G1435700 Malus domestica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Medtr1g098540 Medicago truncatula HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Medtr4g094398 Medicago truncatula HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Nitab4.5_0000787g0150 Nicotiana tabacum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Nitab4.5_0003615g0010 Nicotiana tabacum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Nitab4.5_0006171g0040 Nicotiana tabacum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Nitab4.5_0009907g0010 Nicotiana tabacum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Oeu012737.1 Olea europaea HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Oeu045923.1 Olea europaea HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Oeu049805.1 Olea europaea HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
PSO170G3832 Papaver somniferum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
PSO700G0336 Papaver somniferum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Peaxi162Scf00003g03748 Petunia axillaris HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Peaxi162Scf01807g00002 Petunia axillaris HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Psat6g192240 Pisum sativum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Psat7g095040 Pisum sativum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Psat7g095240 Pisum sativum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Potri.003G008300 Populus trichocarpa HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Prupe.1G579300 Prunus persica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Prupe.8G036200 Prunus persica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
QL02p037802 Quercus lobata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
QL02p038768 Quercus lobata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
QL02p100722 Quercus lobata HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Rhsim11G0085900 Rhododendron simsii HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
RcHm_v2.0_Chr2g0125851 Rosa chinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
RcHm_v2.0_Chr6g0274741 Rosa chinensis HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Sabra03G0004100 Salix brachista HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Sed0007999 Sechium edule HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Sed0016446 Sechium edule HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Solyc01g104590.3 Solanum lycopersicum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Sopen01g045870 Solanum pennellii HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Sopen01g047100 Solanum pennellii HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
PGSC0003DMG400024915 Solanum tuberosum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
PGSC0003DMG400029760 Solanum tuberosum HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
SGA_v2.0_scaffold145G36062 Striga asiatica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
SGA_v2.0_scaffold1G00339 Striga asiatica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
SGA_v2.0_scaffold292G47361 Striga asiatica HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
Thecc.08G155300 Theobroma cacao HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
TPR.G17049 Trifolium pratense HOM05D001759 ORTHO05D012931 8.4e-06 53.5 34 67.6
TWI32G0859 Tripterygium wilfordii HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
TWI34G0250 Tripterygium wilfordii HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
unitig_21.g20534 Utricularia gibba HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
unitig_699.g19860 Utricularia gibba HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
vmacro01471 Vaccinium macrocarpon HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
VMungo0720G2127 Vigna mungo HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
GSVIVG01023241001 Vitis vinifera HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6
GSVIVG01034555001 Vitis vinifera HOM05D001759 ORTHO05D002406 8.4e-06 53.5 34 67.6


User provided reference genes

Program Settings