Gene: Pp3c5_27030
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c5_27030
- Transcript Identifier Pp3c5_27030V3.2
- Gene Type Coding gene
- Location Chr05 : 19078003-19079181 : positive
Gene Family Information
- ID HOM05D001759
- #Genes/#Species 369/99
- Phylogenetic origin
- ID ORTHO05D002406
- #Genes/#Species 290/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c5_27030V3.2
- pacid 32954465
- alias Pp1s154_134V6
- alias Phpat.005G098900
- alias Phypa_190959
- uniprot A9T2B3
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000027 | IBA | GOA Database | ribosomal large subunit assembly | |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G43170 |
| GO:0003735 | IBA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IBA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G43170 |
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT1G43170 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G43170 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT1G43170 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G43170 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT1G43170 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G43170 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT1G43170 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT1G43170 |
| GO:0022625 | IBA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 17.1.2.1.1 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL3 |