Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.3e-96 355.5 176 100.0
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 5.4e-61 238.0 174 71.3
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 4.3e-58 228.4 174 70.1
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 1.6e-57 226.5 175 68.6
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.6e-57 225.3 174 68.4
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 4.7e-57 224.9 177 66.7
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.2e-55 220.3 177 65.0
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.2e-55 220.3 177 65.0
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.5e-55 219.9 157 71.3
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.4e-55 218.8 176 65.3
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 3.4e-55 218.8 181 63.5
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 4.9e-54 214.9 176 63.6
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 8.3e-54 214.2 178 64.6
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 1.1e-53 213.8 176 64.2
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.4e-53 213.4 178 62.4
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 1.8e-53 213.0 183 62.8
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.8e-53 213.0 171 60.8
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 3.2e-53 212.2 149 70.5
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.2e-53 212.2 205 62.9
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 7.0e-53 211.1 199 60.8
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 1.2e-52 210.3 177 61.6
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 1.2e-52 210.3 125 80.8
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 2.0e-52 209.5 181 62.4
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.7e-52 209.1 177 64.4
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.7e-52 209.1 177 64.4
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 4.6e-52 208.4 177 64.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 5.9e-52 208.0 173 61.3
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 1.0e-51 207.2 175 64.6
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.0e-51 207.2 176 62.5
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 1.3e-51 206.8 174 62.1
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.7e-51 206.5 174 63.8
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 2.3e-51 206.1 180 61.7
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 2.3e-51 206.1 199 58.3
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 3.0e-51 205.7 177 65.5
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.0e-51 204.9 123 78.9
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 8.6e-51 204.1 125 74.4
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 8.6e-51 204.1 183 62.3
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 1.1e-50 203.8 169 59.8
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.1e-50 203.8 199 57.3
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 1.5e-50 203.4 188 57.4
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 1.9e-50 203.0 227 54.2
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 9.5e-50 200.7 185 60.5
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 9.5e-50 200.7 180 60.6
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 9.5e-50 200.7 180 60.6
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 1.2e-49 200.3 176 60.2
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 3.6e-49 198.7 176 59.7
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 6.2e-49 198.0 175 60.0
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.1e-48 197.2 175 62.9
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 1.4e-48 196.8 219 53.9
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 1.8e-48 196.4 176 61.9
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 5.2e-48 194.9 169 59.2
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 6.8e-48 194.5 189 57.1
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 8.9e-48 194.1 179 59.2
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 1.5e-47 193.4 188 58.0
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 2.0e-47 193.0 173 56.6
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 9.8e-47 190.7 175 59.4
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 9.8e-47 190.7 128 70.3
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.7e-46 189.9 166 63.3
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.2e-46 189.5 175 60.0
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 2.9e-46 189.1 172 60.5
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 4.9e-46 188.3 173 59.5
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.1e-45 187.2 174 57.5
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.2e-44 183.7 132 68.2
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.6e-44 183.3 174 55.2
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 1.7e-43 179.9 181 53.6
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 2.3e-43 179.5 172 55.2
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 8.6e-43 177.6 177 54.2
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 2.5e-42 176.0 173 55.5
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 2.5e-42 176.0 173 55.5
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 3.3e-42 175.6 175 55.4
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 3.3e-42 175.6 179 57.5
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 7.3e-42 174.5 173 56.6
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 1.2e-41 173.7 215 48.4
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 2.8e-41 172.6 91 89.0
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.6e-41 172.2 140 66.4
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 4.7e-41 171.8 173 56.6
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 1.8e-40 169.9 177 52.0
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 4.4e-39 165.2 172 51.7
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 7.5e-39 164.5 142 63.4
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 2.4e-37 159.5 120 60.8
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 5.4e-37 158.3 102 68.6
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 7.1e-37 157.9 100 70.0
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 9.2e-37 157.5 160 55.0
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 1.7e-35 153.3 97 74.2
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.5e-34 150.2 176 50.6
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 4.3e-34 148.7 121 61.2
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 9.5e-34 147.5 172 48.8
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 4.4e-31 138.7 101 64.4
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 1.7e-30 136.7 98 64.3
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 7.1e-29 131.3 111 65.8
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 6.0e-28 128.3 120 60.0
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 7.8e-28 127.9 111 64.0
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 2.4e-24 116.3 138 50.0
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 7.6e-23 111.3 97 62.9
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 3.8e-22 109.0 123 45.5
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 3.8e-22 109.0 161 45.3
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 4.2e-21 105.5 110 56.4
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 4.6e-20 102.1 71 66.2
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 3.6e-17 92.4 111 51.4
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 3.1e-16 89.4 50 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 4.0e-16 89.0 129 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 3.4e-15 85.9 122 41.8
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 1.4e-08 63.9 112 33.9
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 2.4e-08 63.2 56 48.2
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 4.0e-08 62.4 72 41.7
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 9.0e-08 61.2 112 31.2
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 1.2e-07 60.8 99 33.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.5e-07 60.5 75 42.7
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 2.0e-07 60.1 78 38.5
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 2.6e-07 59.7 74 41.9
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 3.4e-07 59.3 101 34.7
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 4.5e-07 58.9 63 41.3
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 4.5e-07 58.9 80 37.5
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 4.5e-07 58.9 84 36.9
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 4.5e-07 58.9 115 32.2
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 5.8e-07 58.5 72 38.9
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 5.8e-07 58.5 69 40.6
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 5.8e-07 58.5 69 40.6
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 5.8e-07 58.5 72 38.9
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 7.6e-07 58.2 76 39.5
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 7.6e-07 58.2 78 39.7
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 1.3e-06 57.4 77 37.7
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 1.3e-06 57.4 78 38.5
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 1.3e-06 57.4 72 40.3
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 1.3e-06 57.4 85 35.3
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 1.7e-06 57.0 78 37.2
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.7e-06 57.0 78 37.2
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 1.7e-06 57.0 78 38.5
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-06 57.0 85 36.5
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-06 57.0 85 36.5
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-06 57.0 85 36.5
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.7e-06 57.0 85 36.5
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 1.7e-06 57.0 56 44.6
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 2.2e-06 56.6 72 38.9
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.2e-06 56.6 86 34.9
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 38.5
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 38.5
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 38.5
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 37.2
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 37.2
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.2e-06 56.6 76 39.5
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 2.2e-06 56.6 72 40.3
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 2.2e-06 56.6 83 37.3
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 2.2e-06 56.6 72 40.3
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 2.2e-06 56.6 78 37.2
Psat5g150440 Pisum sativum HOM05D002376 ORTHO05D004654 2.2e-06 56.6 72 38.9
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 2.2e-06 56.6 85 36.5
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 2.9e-06 56.2 112 33.9
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 2.9e-06 56.2 72 40.3
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 2.9e-06 56.2 78 37.2
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 2.9e-06 56.2 78 37.2
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 2.9e-06 56.2 76 39.5
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 2.9e-06 56.2 78 37.2
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 2.9e-06 56.2 79 36.7
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 2.9e-06 56.2 84 35.7
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 3.8e-06 55.8 80 36.2
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 3.8e-06 55.8 80 36.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 3.8e-06 55.8 80 36.2
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 3.8e-06 55.8 54 48.1
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 3.8e-06 55.8 90 34.4
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 3.8e-06 55.8 78 37.2
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 3.8e-06 55.8 75 40.0
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 4.9e-06 55.5 75 37.3
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 4.9e-06 55.5 78 37.2
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 4.9e-06 55.5 78 38.5
Glyma.18G054900 Glycine max HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 40.3
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 4.9e-06 55.5 72 38.9
MD03G1055200 Malus domestica HOM05D002376 ORTHO05D004654 4.9e-06 55.5 73 38.4
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 4.9e-06 55.5 56 42.9
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 4.9e-06 55.5 80 37.5
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 42.9
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 6.4e-06 55.1 92 32.6
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 6.4e-06 55.1 85 35.3
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 42.9
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 6.4e-06 55.1 72 38.9
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 6.4e-06 55.1 56 44.6
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 6.4e-06 55.1 88 35.2
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 6.4e-06 55.1 86 34.9
TWI79G1034 Tripterygium wilfordii HOM05D002376 ORTHO05D004654 6.4e-06 55.1 78 35.9
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 6.4e-06 55.1 78 38.5
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 38.9
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 38.9
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 8.4e-06 54.7 90 32.2
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 8.4e-06 54.7 72 40.3
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 8.4e-06 54.7 88 35.2


User provided reference genes

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