Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 6.5e-131 470.7 234 100.0
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.9e-123 445.3 233 95.3
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.9e-123 445.3 233 95.3
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.5e-111 406.4 238 89.1
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 2.0e-87 326.2 233 74.7
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 3.8e-86 322.0 234 75.2
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 1.2e-84 317.0 235 74.9
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 1.4e-80 303.5 160 94.4
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 3.2e-77 292.4 233 70.0
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 2.7e-76 289.3 220 71.8
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.8e-75 286.6 209 72.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-74 283.9 219 69.9
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 1.2e-68 263.8 196 70.9
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.6e-68 263.5 142 93.7
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 7.4e-66 254.6 189 72.0
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 4.8e-65 251.9 189 72.0
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 8.1e-65 251.1 200 69.0
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.8e-64 250.0 189 71.4
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.8e-64 250.0 189 71.4
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.4e-64 249.6 189 71.4
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.1e-64 249.2 187 72.2
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 3.1e-64 249.2 191 70.2
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 5.3e-64 248.4 189 70.9
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 5.3e-64 248.4 187 71.7
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 5.3e-64 248.4 189 70.9
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.2e-63 247.3 189 70.4
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.5e-63 246.9 189 70.4
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.6e-63 246.1 189 69.8
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.6e-63 246.1 189 69.8
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 2.6e-63 246.1 189 70.4
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 4.5e-63 245.4 189 70.4
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.9e-62 242.7 189 69.8
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.9e-62 242.7 189 69.8
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 6.5e-62 241.5 191 68.6
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 4.2e-61 238.8 130 92.3
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 7.1e-61 238.0 188 69.7
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 4.6e-60 235.3 181 70.7
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 6.7e-59 231.5 140 85.7
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.5e-58 230.3 189 67.7
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.3e-58 229.2 126 89.7
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.1e-56 224.2 177 69.5
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 1.8e-56 223.4 188 64.4
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 5.3e-56 221.9 179 68.2
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 6.9e-56 221.5 188 64.4
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 9.0e-56 221.1 188 63.3
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 1.2e-55 220.7 188 62.8
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 2.9e-54 216.1 127 85.8
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 9.3e-53 211.1 181 64.1
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.5e-50 203.8 178 62.9
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.6e-49 200.3 110 89.1
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 4.1e-48 195.7 188 61.7
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 2.2e-46 189.9 156 67.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-45 187.6 160 66.2
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 5.1e-43 178.7 126 71.4
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 7.4e-42 174.9 104 86.5
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.4e-37 160.6 118 72.0
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 3.2e-37 159.5 84 92.9
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 4.2e-37 159.1 87 86.2
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 5.5e-37 158.7 127 68.5
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 5.5e-37 158.7 149 63.1
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.6e-36 157.1 84 91.7
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 1.0e-35 154.5 82 90.2
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 1.5e-34 150.6 91 81.3
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 3.3e-34 149.4 175 47.4
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 2.2e-33 146.7 104 68.3
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-33 146.0 151 57.6
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-33 146.0 151 57.6
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 5.3e-32 142.1 75 92.0
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 5.3e-32 142.1 137 59.9
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.9e-30 136.3 70 92.9
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 6.1e-28 128.6 113 58.4
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.3e-27 126.7 62 96.8
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.2e-27 125.6 62 95.2
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 8.8e-27 124.8 82 76.8
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 2.6e-26 123.2 67 92.5
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 4.4e-26 122.5 77 76.6
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.3e-25 120.9 68 83.8
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 2.4e-24 116.7 92 60.9
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 1.6e-23 114.0 62 91.9
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 1.7e-22 110.5 118 56.8
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 2.2e-22 110.2 57 89.5
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.2e-21 106.3 77 75.3
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 3.6e-20 102.8 50 98.0
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 4.7e-20 102.4 72 70.8
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 2.3e-19 100.1 60 76.7
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 8.8e-19 98.2 50 92.0
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 8.8e-19 98.2 55 80.0
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.2e-18 97.8 110 53.6
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-18 97.1 57 80.7
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 3.4e-18 96.3 71 60.6
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 2.4e-16 90.1 45 91.1
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.1e-16 89.4 42 100.0
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 3.5e-15 86.3 46 84.8
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 5.9e-15 85.5 41 97.6
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 1.0e-14 84.7 113 47.8
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.0e-14 84.7 149 36.9
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.3e-14 84.3 117 49.6
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.9e-14 83.2 42 90.5
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 1.9e-13 80.5 71 64.8
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.5e-13 79.0 42 88.1
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 2.8e-12 76.6 41 85.4
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 3.6e-12 76.3 47 74.5
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 5.2e-11 72.4 54 66.7
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.8e-11 72.0 39 87.2
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.5e-10 68.6 38 86.8
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 4.9e-09 65.9 49 63.3
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 1.8e-08 63.9 153 32.0
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 3.1e-08 63.2 49 65.3
PGSC0003DMG400023928 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.0e-06 55.8 23 100.0
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 5.0e-06 55.8 30 90.0


User provided reference genes

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