Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06300 Davidia involucrata HOM05D000454 ORTHO05D002637 1.6e-77 292.7 155 100.0
Dinv06301 Davidia involucrata HOM05D000454 ORTHO05D002637 2.3e-39 166.0 155 69.7
Dinv04270 Davidia involucrata HOM05D000454 ORTHO05D002637 2.4e-36 156.0 159 64.8
Dinv04265 Davidia involucrata HOM05D000454 ORTHO05D002637 6.9e-36 154.5 153 64.7
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 4.1e-12 75.5 87 50.6
Actinidia39143 Actinidia chinensis HOM05D000454 ORTHO05D002637 2.6e-11 72.8 66 57.6
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 7.7e-11 71.2 66 59.1
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.0e-10 70.9 47 72.3
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 1.3e-10 70.5 67 52.2
Ciclev10027021m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.3e-10 70.5 50 64.0
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 1.7e-10 70.1 67 52.2
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 1.7e-10 70.1 77 44.2
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 1.7e-10 70.1 77 44.2
Sc12g0009600 Simmondsia chinensis HOM05D000454 ORTHO05D002637 1.7e-10 70.1 46 71.7
Thecc.06G096900 Theobroma cacao HOM05D000454 ORTHO05D002637 1.7e-10 70.1 120 37.5
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 2.2e-10 69.7 67 52.2
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 2.9e-10 69.3 50 68.0
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 2.9e-10 69.3 64 54.7
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.8e-10 68.9 68 54.4
HanXRQChr09g0275901 Helianthus annuus HOM05D000454 ORTHO05D002637 3.8e-10 68.9 48 66.7
Manes.04G132202 Manihot esculenta HOM05D000454 ORTHO05D002637 3.8e-10 68.9 76 52.6
Manes.11G035400 Manihot esculenta HOM05D000454 ORTHO05D002637 3.8e-10 68.9 98 39.8
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 3.8e-10 68.9 100 42.0
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 5.0e-10 68.6 48 66.7
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 6.5e-10 68.2 48 64.6
Prupe.3G062300 Prunus persica HOM05D000454 ORTHO05D002637 8.5e-10 67.8 64 54.7
TWI12G0592 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 8.5e-10 67.8 66 53.0
arahy.Tifrunner.gnm1.ann1.3J38IA Arachis hypogaea HOM05D000454 ORTHO05D002637 1.1e-09 67.4 64 51.6
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.1e-09 67.4 64 57.8
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 1.1e-09 67.4 69 55.1
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 1.1e-09 67.4 48 66.7
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 1.1e-09 67.4 48 64.6
Carub.0001s3214 Capsella rubella HOM05D000454 ORTHO05D002637 1.4e-09 67.0 89 39.3
Manes.11G035500 Manihot esculenta HOM05D000454 ORTHO05D002637 1.4e-09 67.0 102 39.2
Psat1g005560 Pisum sativum HOM05D000454 ORTHO05D002637 1.9e-09 66.6 48 64.6
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 1.9e-09 66.6 48 66.7
Prupe.3G065300 Prunus persica HOM05D000454 ORTHO05D002637 1.9e-09 66.6 64 56.2
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 1.9e-09 66.6 72 51.4
Cpa.g.sc80.7 Carica papaya HOM05D000454 ORTHO05D002637 2.5e-09 66.2 69 52.2
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 2.5e-09 66.2 90 41.1
Cpa.g.sc80.5 Carica papaya HOM05D000454 ORTHO05D002637 3.2e-09 65.9 42 69.0
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 3.2e-09 65.9 75 49.3
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.2e-09 65.9 75 49.3
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.2e-09 65.9 75 49.3
HanXRQChr09g0275911 Helianthus annuus HOM05D000454 ORTHO05D002637 3.2e-09 65.9 46 65.2
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 3.2e-09 65.9 118 39.8
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 3.2e-09 65.9 83 48.2
Thecc.06G097100 Theobroma cacao HOM05D000454 ORTHO05D002637 4.2e-09 65.5 72 55.6
CsaV3_3G023710 Cucumis sativus L. HOM05D000454 ORTHO05D002637 5.5e-09 65.1 73 52.1
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 5.5e-09 65.1 51 68.6
RcHm_v2.0_Chr2g0139951 Rosa chinensis HOM05D000454 ORTHO05D002637 5.5e-09 65.1 52 59.6
AL1G48550 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 7.2e-09 64.7 51 58.8
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 7.2e-09 64.7 64 53.1
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 7.2e-09 64.7 64 50.0
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 7.2e-09 64.7 64 50.0
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 7.2e-09 64.7 48 60.4
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 7.2e-09 64.7 111 40.5
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 7.2e-09 64.7 53 67.9
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 9.4e-09 64.3 100 39.0
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 9.4e-09 64.3 80 46.2
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 9.4e-09 64.3 63 52.4
Psat3g208040 Pisum sativum HOM05D000454 ORTHO05D002637 9.4e-09 64.3 48 62.5
COL.COLO4_30483 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.2e-08 63.9 70 45.7
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 1.2e-08 63.9 48 62.5
MD17G1187000 Malus domestica HOM05D000454 ORTHO05D002637 1.2e-08 63.9 46 67.4
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 2.1e-08 63.2 72 41.7
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.1e-08 63.2 73 53.4
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 2.7e-08 62.8 72 41.7
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 2.7e-08 62.8 72 41.7
C08p13640 Brassica napus HOM05D000454 ORTHO05D002637 2.7e-08 62.8 72 44.4
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 2.7e-08 62.8 72 41.7
BolC8t49002H Brassica oleracea HOM05D000454 ORTHO05D002637 2.7e-08 62.8 72 44.4
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 2.7e-08 62.8 72 41.7
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 2.7e-08 62.8 67 55.2
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 2.7e-08 62.8 65 53.8
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 2.7e-08 62.8 46 65.2
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 3.6e-08 62.4 63 50.8
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 4.6e-08 62.0 72 41.7
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 4.6e-08 62.0 58 48.3
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 4.6e-08 62.0 105 35.2
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.6e-08 62.0 66 50.0
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 4.6e-08 62.0 72 54.2
Haze_07930 Corylus avellana HOM05D000454 ORTHO05D002637 6.1e-08 61.6 87 44.8
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 6.1e-08 61.6 51 64.7
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.1e-08 61.6 51 64.7
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.1e-08 61.6 51 64.7
arahy.Tifrunner.gnm1.ann1.CL84N0 Arachis hypogaea HOM05D000454 ORTHO05D002637 7.9e-08 61.2 46 58.7
CARHR268010 Cardamine hirsuta HOM05D000454 ORTHO05D002637 7.9e-08 61.2 69 44.9
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 7.9e-08 61.2 101 40.6
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 7.9e-08 61.2 104 40.4
Carub.0001s0976 Capsella rubella HOM05D000454 ORTHO05D002637 1.0e-07 60.8 57 47.4
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 1.0e-07 60.8 103 38.8
Nn3g20364 Nelumbo nucifera HOM05D000454 ORTHO05D002637 1.0e-07 60.8 43 67.4
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 1.0e-07 60.8 45 64.4
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 1.0e-07 60.8 45 64.4
BcaC02g08542 Brassica carinata HOM05D000454 ORTHO05D002637 1.4e-07 60.5 99 35.4
C04p53160 Brassica napus HOM05D000454 ORTHO05D002637 1.4e-07 60.5 99 35.4
BolC4t26873H Brassica oleracea HOM05D000454 ORTHO05D002637 1.4e-07 60.5 99 35.4
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 1.4e-07 60.5 70 44.3
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 1.4e-07 60.5 104 40.4
RcHm_v2.0_Chr2g0139941 Rosa chinensis HOM05D000454 ORTHO05D002637 1.4e-07 60.5 68 51.5
AT1G34050 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.8e-07 60.1 63 47.6
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.8e-07 60.1 70 42.9
ClCG07G013260 Citrullus lanatus HOM05D000454 ORTHO05D002637 1.8e-07 60.1 70 50.0
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 1.8e-07 60.1 48 60.4
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 2.3e-07 59.7 86 44.2
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 2.3e-07 59.7 97 35.1
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 2.3e-07 59.7 67 46.3
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 3.0e-07 59.3 73 47.9
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 3.9e-07 58.9 97 35.1
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 3.9e-07 58.9 97 35.1
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 5.1e-07 58.5 99 34.3
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 5.1e-07 58.5 77 39.0
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 5.1e-07 58.5 48 58.3
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 5.1e-07 58.5 48 58.3
Cpa.g.sc80.8 Carica papaya HOM05D000454 ORTHO05D002637 6.7e-07 58.2 58 53.4
QL05p020750 Quercus lobata HOM05D000454 ORTHO05D002637 6.7e-07 58.2 106 37.7
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 8.8e-07 57.8 41 56.1
A03p14470 Brassica napus HOM05D000454 ORTHO05D002637 8.8e-07 57.8 68 42.6
BraA03t10742Z Brassica rapa HOM05D000454 ORTHO05D002637 8.8e-07 57.8 68 42.6
BcaB06g27937 Brassica carinata HOM05D000454 ORTHO05D002637 1.1e-06 57.4 127 29.1
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 1.1e-06 57.4 61 47.5
C03p16880 Brassica napus HOM05D000454 ORTHO05D002637 1.5e-06 57.0 82 40.2
Carub.0001s4235 Capsella rubella HOM05D000454 ORTHO05D002637 1.5e-06 57.0 123 29.3
Lsat_1_v5_gn_4_101080 Lactuca sativa HOM05D000454 ORTHO05D002637 2.0e-06 56.6 46 60.9
A03p14460 Brassica napus HOM05D000454 ORTHO05D002637 2.5e-06 56.2 68 42.6
C03p16890 Brassica napus HOM05D000454 ORTHO05D002637 2.5e-06 56.2 68 42.6
BolC3t14102H Brassica oleracea HOM05D000454 ORTHO05D002637 2.5e-06 56.2 68 42.6
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 3.3e-06 55.8 111 35.1
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 3.3e-06 55.8 64 53.1
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 3.3e-06 55.8 66 47.0
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 3.3e-06 55.8 142 33.8
ATR1149G130 Amborella trichopoda HOM05D000454 ORTHO05D002637 4.3e-06 55.5 80 43.8
BcaC01g06320 Brassica carinata HOM05D000454 ORTHO05D002637 4.3e-06 55.5 73 41.1
BcaC01g06321 Brassica carinata HOM05D000454 ORTHO05D002637 4.3e-06 55.5 73 41.1
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 4.3e-06 55.5 71 47.9
CARHR180050 Cardamine hirsuta HOM05D000454 ORTHO05D002637 7.4e-06 54.7 64 48.4
Dinv06303 Davidia involucrata HOM05D031238 ORTHO05D002637 7.4e-06 54.7 45 64.4


User provided reference genes

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