Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 7.3e-200 700.3 335 100.0
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 6.0e-186 654.1 331 93.7
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 8.4e-180 633.6 327 91.4
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.2e-178 629.8 327 90.5
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.5e-176 622.9 327 89.6
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 5.6e-176 620.9 327 89.0
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.1e-174 615.1 326 87.4
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 7.6e-173 610.5 327 88.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.4e-171 606.3 327 87.5
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 9.3e-171 603.6 327 86.2
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 2.7e-170 602.1 327 85.6
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 3.5e-170 601.7 325 85.2
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 5.1e-169 597.8 331 83.7
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.1e-168 596.7 327 85.3
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.1e-168 596.7 355 82.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.9e-168 595.9 327 84.7
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 6.2e-167 590.9 327 84.7
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.4e-166 589.0 329 83.9
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 9.9e-165 583.6 327 83.5
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 1.3e-164 583.2 327 82.3
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 3.8e-164 581.6 322 83.2
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 4.9e-164 581.3 327 83.2
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 8.4e-164 580.5 324 82.7
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.2e-163 578.6 327 82.6
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 5.4e-163 577.8 325 80.6
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 2.7e-162 575.5 327 82.0
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.8e-161 572.8 325 80.0
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.5e-160 569.7 327 80.4
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.5e-160 568.9 327 82.3
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 5.6e-160 567.8 324 81.5
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.6e-159 566.2 328 81.7
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.8e-159 565.5 327 80.4
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.2e-157 560.1 323 82.0
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.0e-157 559.3 328 78.7
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.6e-157 558.9 330 77.6
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.4e-157 558.5 327 80.1
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 7.6e-157 557.4 325 82.5
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.7e-156 556.2 328 79.9
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 3.8e-156 555.1 331 78.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 3.8e-156 555.1 325 80.6
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.9e-155 552.7 331 81.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 2.4e-155 552.4 328 77.4
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.4e-155 552.4 328 77.7
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 3.2e-155 552.0 366 73.8
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 5.5e-155 551.2 328 77.4
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 5.5e-155 551.2 328 77.4
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 7.1e-155 550.8 336 79.2
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 9.3e-155 550.4 329 77.8
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.2e-154 550.1 328 78.0
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.2e-154 550.1 328 77.4
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.1e-154 549.3 321 78.2
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.1e-154 549.3 321 78.2
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.1e-154 549.3 321 78.2
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.5e-154 548.5 321 77.9
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 3.5e-154 548.5 321 78.5
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.5e-154 548.5 354 74.6
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 6.0e-154 547.7 331 77.9
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.0e-153 547.0 329 78.1
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.1e-152 543.5 321 78.5
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.5e-152 543.1 321 77.6
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.5e-152 543.1 321 78.2
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 4.3e-152 541.6 321 78.2
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 4.3e-152 541.6 321 78.2
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 4.8e-151 538.1 328 75.0
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 9.0e-150 533.9 317 78.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 3.4e-149 531.9 289 85.8
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 5.8e-149 531.2 328 73.8
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.1e-147 526.9 327 76.8
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.4e-147 526.6 327 76.5
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.9e-147 526.2 328 77.1
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.9e-147 526.2 327 75.8
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 3.2e-147 525.4 307 79.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 5.5e-147 524.6 327 76.5
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 5.7e-144 514.6 337 73.6
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.6e-143 513.1 336 74.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 3.7e-143 511.9 308 77.9
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 5.3e-142 508.1 347 71.2
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.2e-141 506.9 265 88.7
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.0e-141 506.1 317 76.0
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 2.6e-141 505.8 327 73.1
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.2e-140 502.7 360 66.9
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 8.5e-140 500.7 327 72.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.2e-139 498.4 306 75.8
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.8e-137 493.0 316 74.1
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 3.0e-137 492.3 326 75.2
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 6.7e-137 491.1 339 69.9
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.5e-136 490.0 267 85.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.7e-136 488.0 323 71.5
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 7.4e-136 487.6 343 69.7
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 4.8e-135 485.0 327 70.6
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.5e-133 479.9 328 71.3
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 2.9e-132 475.7 318 71.4
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.9e-131 473.0 318 69.2
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.7e-130 469.2 325 68.6
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.3e-127 460.3 264 81.4
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 6.3e-127 458.0 264 80.3
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 8.2e-127 457.6 264 80.3
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.1e-126 455.3 267 80.9
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 9.1e-126 454.1 264 80.3
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.0e-125 453.0 263 79.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.4e-125 452.2 264 79.2
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 5.9e-125 451.4 324 66.7
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.9e-124 449.1 322 63.0
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 3.2e-123 445.7 229 90.4
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 5.5e-123 444.9 264 79.2
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-120 435.6 264 76.9
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-120 435.6 264 76.9
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 7.4e-120 434.5 268 76.1
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.1e-114 416.4 257 75.9
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 6.1e-114 414.8 325 66.2
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.0e-112 409.8 334 56.9
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.4e-110 402.9 307 64.8
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 3.1e-110 402.5 224 81.7
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 9.1e-110 401.0 315 60.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 2.9e-108 396.0 205 89.8
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 2.5e-107 392.9 205 88.3
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.2e-107 392.5 334 54.8
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 8.6e-100 367.9 331 56.8
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.9e-99 366.7 322 55.0
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.3e-97 359.8 229 74.2
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 3.0e-97 359.4 205 79.0
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 9.8e-96 354.4 326 52.1
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 9.5e-83 311.2 220 68.2
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.6e-80 303.1 220 68.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.7e-79 299.3 213 71.8
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.2e-72 277.7 153 86.9
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.5e-72 277.3 147 86.4
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 3.4e-72 276.2 472 36.0
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 8.3e-71 271.6 144 86.1
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 3.5e-69 266.2 257 53.7
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 8.9e-65 251.5 146 78.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.1e-62 244.6 318 39.9
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.5e-51 206.8 159 58.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 4.9e-47 192.6 219 49.8
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 4.0e-41 172.9 288 34.0
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 8.4e-31 138.7 82 80.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.3e-28 130.6 146 50.7
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 5.0e-23 112.8 62 82.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-21 108.2 58 79.3
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.2e-21 108.2 63 73.0
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 1.6e-21 107.8 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.6e-21 107.8 66 74.2
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.5e-19 100.5 244 27.9
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.5e-15 85.5 100 48.0
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.4e-12 78.2 48 75.0
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.0e-08 64.3 37 67.6


User provided reference genes

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