Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 2.4e-147 525.4 248 100.0
Dinv09727 Davidia involucrata HOM05D021242 ORTHO05D022491 1.9e-56 223.4 105 98.1
Dinv06144 Davidia involucrata HOM05D021242 ORTHO05D022491 9.6e-56 221.1 139 79.9
Dinv04356 Davidia involucrata HOM05D021242 ORTHO05D022491 1.2e-50 204.1 140 75.0
Dinv14713 Davidia involucrata HOM05D021242 ORTHO05D022491 4.8e-47 192.2 92 95.7
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.0e-25 119.8 138 48.6
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.9e-25 119.4 108 55.6
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.6e-23 114.0 85 63.5
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 6.9e-22 108.6 81 65.4
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 9.0e-22 108.2 125 45.6
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.0e-21 107.1 84 59.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.7e-21 105.1 134 45.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.1e-19 101.3 95 55.8
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 7.2e-19 98.6 101 50.5
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.7e-18 96.7 136 38.2
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 3.9e-17 92.8 98 50.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 8.8e-17 91.7 98 50.0
Dinv04357 Davidia involucrata HOM05D021242 ORTHO05D022491 1.5e-16 90.9 51 84.3
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.3e-16 89.7 99 47.5
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.3e-16 89.7 98 49.0
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 9.7e-16 88.2 98 48.0
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.8e-15 86.7 98 49.0
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.8e-15 86.7 98 46.9
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.4e-14 83.6 103 40.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.4e-14 83.6 85 51.8
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.1e-14 83.2 99 46.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.1e-14 82.8 101 47.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 6.9e-14 82.0 88 44.3
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 6.9e-14 82.0 92 45.7
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 9.1e-14 81.6 90 47.8
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 9.1e-14 81.6 121 36.4
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 7.7e-13 78.6 163 33.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.9e-12 76.6 95 46.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.8e-12 76.3 132 37.1
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 5.0e-12 75.9 103 45.6
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 5.0e-12 75.9 114 39.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-11 74.3 133 39.1
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.4e-11 74.3 132 36.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.9e-11 73.9 101 48.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.2e-11 73.2 133 38.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 3.2e-11 73.2 121 39.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 7.2e-11 72.0 86 46.5
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 9.4e-11 71.6 103 42.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.6e-10 70.9 105 42.9
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.1e-10 70.5 88 42.0
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.7e-10 70.1 134 37.3
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.7e-10 70.1 101 42.6
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 2.7e-10 70.1 132 35.6
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.6e-10 69.7 129 35.7
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-10 69.7 132 37.1
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.6e-10 69.7 103 37.9
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.7e-10 69.3 129 35.7
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 7.9e-10 68.6 117 33.3
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-09 68.2 103 36.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.4e-09 67.8 102 37.3
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 2.3e-09 67.0 90 41.1
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 8.8e-09 65.1 87 37.9
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-08 64.7 91 39.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.6e-08 63.5 121 35.5
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 3.3e-08 63.2 88 39.8
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 5.7e-08 62.4 85 35.3
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 5.7e-08 62.4 85 35.3
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 7.4e-08 62.0 117 34.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 9.7e-08 61.6 95 37.9
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.3e-07 61.2 90 40.0
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.7e-07 59.7 57 59.6
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 4.8e-07 59.3 123 32.5
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.3e-07 58.9 56 58.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 6.3e-07 58.9 91 40.7
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-06 57.8 92 37.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.4e-06 57.8 118 30.5
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.4e-06 57.8 90 35.6
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.4e-06 57.8 89 37.1
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.8e-06 57.4 96 37.5
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.8e-06 57.4 89 39.3
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 2.4e-06 57.0 90 34.4
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.4e-06 57.0 96 36.5
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.4e-06 57.0 91 35.2
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.1e-06 56.6 92 38.0
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.1e-06 56.2 88 36.4
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 5.3e-06 55.8 93 36.6
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.3e-06 55.8 86 37.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 7.0e-06 55.5 91 35.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 7.0e-06 55.5 136 30.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 7.0e-06 55.5 114 36.8
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.1e-06 55.1 105 33.3


User provided reference genes

Program Settings