Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 0.0e+00 1208.7 577 100.0
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 0.0e+00 1124.8 577 93.8
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.9e-312 1074.7 559 91.8
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 2.1e-308 1061.6 555 90.5
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 2.8e-308 1061.2 563 89.5
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.8e-307 1058.5 578 87.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 5.3e-307 1057.0 562 89.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.2e-306 1055.8 559 90.3
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.5e-306 1055.4 570 88.8
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.5e-306 1053.9 578 86.9
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.8e-305 1050.8 572 87.9
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.9e-305 1050.4 582 86.6
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.1e-304 1049.3 559 90.0
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 9.3e-304 1046.2 582 86.3
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.2e-303 1045.8 582 86.3
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.8e-302 1042.0 562 88.1
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 8.7e-302 1039.6 565 89.2
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 4.3e-301 1037.3 562 88.1
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.6e-300 1035.4 577 84.9
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.8e-300 1033.9 555 89.0
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.6e-295 1018.8 524 92.9
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 4.6e-295 1017.3 555 86.3
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 6.0e-295 1016.9 559 86.6
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 7.9e-295 1016.5 561 85.9
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.0e-294 1014.6 561 86.3
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.1e-293 1012.7 555 86.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 4.3e-293 1010.7 565 84.8
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 4.3e-293 1010.7 534 89.0
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.8e-292 1007.3 551 86.0
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 8.2e-292 1006.5 554 86.5
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.4e-291 1005.7 553 85.9
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.8e-291 1005.4 553 86.1
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 6.9e-291 1003.4 569 84.9
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.0e-290 1001.9 551 85.7
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.0e-290 1001.9 554 85.6
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.5e-290 1000.7 557 85.5
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 8.5e-289 996.5 556 85.3
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.4e-288 995.7 565 82.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 6.1e-287 990.3 551 84.8
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.8e-286 988.8 597 79.2
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 3.9e-286 987.6 548 84.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.1e-285 986.1 563 82.8
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 4.3e-285 984.2 563 82.1
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.3e-284 982.6 539 86.6
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 5.3e-283 977.2 576 80.0
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.9e-282 973.8 553 84.3
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.0e-281 973.0 555 83.8
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.7e-281 972.2 554 82.5
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.2e-281 971.8 559 81.6
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 8.5e-281 969.9 580 79.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.1e-280 969.5 585 80.9
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.1e-280 969.5 554 81.8
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.1e-280 969.5 563 80.5
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.5e-280 968.4 536 85.6
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.4e-278 962.6 596 76.8
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.4e-278 962.6 554 82.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.9e-278 961.1 548 82.5
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 5.1e-278 960.7 560 80.2
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 6.7e-278 960.3 533 86.9
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.1e-277 959.5 553 80.8
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 2.6e-277 958.4 559 80.0
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.3e-277 958.0 559 80.0
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 2.2e-276 955.3 556 81.8
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.8e-276 954.9 559 80.3
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.8e-276 954.1 536 85.6
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.4e-275 952.6 563 79.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 3.4e-274 948.0 566 81.1
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.7e-273 945.7 535 83.4
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 1.7e-273 945.7 550 81.1
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.2e-273 945.3 559 78.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.4e-272 942.6 597 78.4
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 6.1e-271 937.2 552 79.0
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.3e-270 935.3 557 79.5
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.0e-270 934.9 556 79.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 6.7e-270 933.7 562 79.2
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 8.8e-270 933.3 552 78.8
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.1e-269 932.9 534 84.3
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.5e-269 932.6 549 80.0
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.6e-269 931.8 560 78.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 5.7e-269 930.6 562 78.8
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 9.7e-269 929.9 554 80.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.7e-268 929.1 557 78.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.2e-268 928.7 517 84.5
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.8e-268 928.3 559 79.2
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 8.2e-268 926.8 554 78.5
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 8.2e-268 926.8 550 76.9
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.1e-267 926.4 554 79.4
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.1e-267 926.4 553 80.1
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.4e-267 926.0 556 78.8
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 9.1e-267 923.3 552 79.0
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 7.7e-266 920.2 559 77.3
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.7e-265 919.1 551 79.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 3.2e-264 914.8 557 78.1
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 3.2e-264 914.8 543 82.5
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 7.2e-264 913.7 554 77.8
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.2e-263 912.9 573 75.9
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.2e-261 906.4 555 78.2
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 1.2e-261 906.4 555 78.2
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 2.0e-261 905.6 555 78.0
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 9.7e-261 903.3 555 78.0
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 2.8e-260 901.7 535 79.8
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 2.8e-260 901.7 555 78.0
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 8.2e-260 900.2 555 77.1
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.8e-259 899.0 534 80.3
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 7.0e-259 897.1 534 80.0
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 7.0e-259 897.1 534 80.1
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 7.0e-259 897.1 534 80.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 7.7e-258 893.6 549 76.9
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.2e-257 892.1 532 81.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.0e-257 891.0 505 84.0
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 6.5e-257 890.6 573 74.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.5e-256 889.4 546 79.7
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 2.7e-250 868.6 537 78.2
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 2.9e-249 865.1 544 76.8
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.0e-249 864.4 515 80.8
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 5.5e-248 860.9 495 82.8
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 7.2e-248 860.5 518 79.0
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 3.1e-243 845.1 543 77.0
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 4.1e-243 844.7 555 73.9
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 3.8e-241 838.2 517 76.4
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.5e-240 835.5 553 74.7
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 3.2e-235 818.5 580 68.6
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.3e-230 802.4 478 80.8
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.9e-225 785.0 552 68.8
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.3e-200 701.8 592 60.0
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.6e-200 701.4 556 63.7
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 6.2e-199 698.0 551 63.5
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 8.1e-199 697.6 416 81.0
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.1e-195 687.2 580 60.5
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.4e-174 616.3 355 86.2
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.1e-150 536.2 320 81.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.0e-148 531.2 350 72.9
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.7e-138 496.5 278 83.1
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 2.6e-136 490.0 263 91.3
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.8e-127 459.9 317 71.0
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.0e-121 441.4 513 50.5
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-113 414.8 294 70.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.7e-106 389.4 293 63.5
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.5e-104 384.4 217 76.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-100 371.3 205 85.4
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.9e-99 367.5 281 65.1
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.0e-93 345.9 251 70.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.7e-79 301.2 570 33.5
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.2e-79 300.8 198 74.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.3e-76 291.6 201 70.6
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-65 255.4 145 75.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 3.5e-61 240.4 457 31.9
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.5e-56 224.9 126 80.2
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 3.6e-53 213.8 228 47.8
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-38 165.2 106 66.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.2e-36 156.8 128 57.0
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 6.7e-36 156.4 122 59.8
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 4.1e-33 147.1 100 71.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 7.0e-33 146.4 106 64.2
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 7.2e-30 136.3 153 48.4
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.3e-23 115.5 121 51.2
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.1e-22 112.5 54 88.9
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.1e-17 94.4 56 76.8
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 4.0e-12 77.4 63 55.6
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 5.7e-11 73.6 43 79.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.5e-06 58.9 64 37.5
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 2.5e-06 58.2 55 43.6
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.5e-06 58.2 55 43.6
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 4.3e-06 57.4 55 43.6
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.3e-06 57.4 55 43.6
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.3e-06 57.4 55 43.6
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 4.3e-06 57.4 84 34.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 5.6e-06 57.0 63 36.5
GSVIVG01030125001 Vitis vinifera HOM05D000341 ORTHO05D001197 7.3e-06 56.6 52 42.3


User provided reference genes

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