Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 8.3e-225 783.5 424 100.0
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.5e-146 523.5 431 74.0
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 2.2e-137 493.0 431 69.1
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 3.8e-137 492.3 429 70.6
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 8.0e-119 431.4 446 60.3
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 5.2e-118 428.7 431 61.9
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 2.9e-113 412.9 463 59.4
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 8.3e-108 394.8 449 58.8
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.1e-107 392.5 469 57.6
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 5.4e-107 392.1 502 53.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.2e-106 391.0 431 58.5
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 3.5e-106 389.4 437 60.6
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 5.0e-105 385.6 434 57.1
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 2.8e-103 379.8 435 59.1
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 4.0e-102 375.9 462 53.0
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 5.7e-101 372.1 469 55.7
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 4.9e-100 369.0 438 57.8
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 8.3e-100 368.2 439 56.7
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 8.3e-100 368.2 428 56.3
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 5.4e-99 365.5 437 58.1
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 7.0e-99 365.2 428 57.5
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 1.6e-98 364.0 449 54.3
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.6e-98 364.0 495 53.3
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 5.9e-98 362.1 440 56.4
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.3e-97 360.1 485 49.9
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.5e-96 356.7 439 58.1
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.5e-96 356.7 470 53.8
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.3e-96 356.3 437 57.9
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 7.3e-96 355.1 429 55.2
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 9.5e-96 354.8 428 57.0
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 9.5e-96 354.8 573 47.1
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 3.6e-95 352.8 433 55.4
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 4.7e-95 352.4 489 50.9
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 4.7e-95 352.4 465 52.9
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.0e-94 351.3 427 56.4
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.3e-94 350.1 440 57.5
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 2.3e-94 350.1 486 50.8
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 5.2e-94 349.0 424 55.4
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 4.4e-93 345.9 426 54.9
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 4.4e-93 345.9 578 47.2
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 5.8e-93 345.5 426 54.7
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.4e-91 340.9 431 53.8
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.1e-91 339.3 427 54.1
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.1e-91 339.3 427 54.1
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 5.4e-91 339.0 476 51.9
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 7.0e-91 338.6 513 48.9
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.6e-90 337.4 431 54.5
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.5e-90 336.3 426 53.3
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 7.8e-90 335.1 449 51.7
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 6.6e-89 332.0 438 50.7
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.6e-87 327.4 441 52.2
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 6.2e-87 325.5 515 44.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.3e-86 323.6 535 46.0
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.3e-86 323.6 463 49.9
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.3e-86 323.6 463 49.9
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.5e-85 320.9 434 50.5
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.0e-85 320.5 442 49.8
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 2.0e-85 320.5 528 46.8
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 3.4e-85 319.7 497 46.1
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 5.8e-85 318.9 540 45.6
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.2e-84 317.0 564 42.0
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 4.9e-84 315.8 456 49.3
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 1.1e-83 314.7 428 52.3
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 1.9e-83 313.9 443 48.3
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 4.1e-83 312.8 443 48.1
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 7.0e-83 312.0 456 48.5
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.2e-82 311.2 455 49.2
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.5e-82 309.7 473 48.4
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.0e-81 308.1 456 48.0
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.7e-81 307.4 537 44.7
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 8.6e-81 305.1 553 42.3
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.1e-80 304.7 445 47.6
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.1e-80 304.7 445 47.9
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.9e-80 303.9 446 48.0
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 9.5e-80 301.6 499 45.7
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 3.6e-79 299.7 605 41.5
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 3.6e-79 299.7 478 46.4
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 4.0e-78 296.2 437 49.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.8e-78 295.4 588 41.2
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.2e-77 294.7 431 49.7
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.8e-77 292.4 456 47.6
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.1e-75 288.1 471 46.1
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 1.1e-75 288.1 508 42.7
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.1e-75 286.2 627 38.8
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 9.2e-75 285.0 625 39.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 9.2e-75 285.0 625 39.0
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.2e-74 284.6 426 47.2
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-74 284.6 604 39.4
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 4.6e-74 282.7 538 43.9
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.5e-72 277.7 624 38.1
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 2.5e-72 276.9 545 42.2
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 2.8e-71 273.5 513 40.9
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 8.9e-70 268.5 473 42.5
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.0e-69 267.3 496 42.9
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 9.9e-69 265.0 551 41.0
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 1.3e-65 254.6 169 81.1
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 1.3e-65 254.6 622 37.8
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 7.3e-64 248.8 426 46.0
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.6e-63 246.5 526 38.6
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.1e-62 245.0 241 61.4
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 4.0e-62 243.0 534 39.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.1e-55 218.8 424 42.0
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 7.1e-51 205.7 299 48.5
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.0e-45 187.6 349 43.6
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 2.6e-45 187.2 679 30.6
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.1e-43 181.8 504 35.9
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.2e-43 180.3 185 58.9
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.8e-41 174.5 394 36.3
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.2e-39 166.0 109 82.6
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 2.0e-37 161.0 110 85.5
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 7.6e-37 159.1 178 55.1
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.9e-35 154.5 261 48.7
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.2e-35 153.3 325 40.6
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 7.1e-35 152.5 162 58.0
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.1e-35 152.5 95 82.1
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.2e-34 151.8 82 96.3
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 3.3e-32 143.7 139 61.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.2e-31 141.0 148 55.4
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 3.4e-29 133.7 389 33.7
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 5.0e-28 129.8 227 45.8
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 6.1e-26 122.9 106 65.1
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.8e-25 119.0 394 32.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.8e-22 111.3 128 52.3
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 4.5e-21 106.7 174 38.5
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.7e-20 104.8 63 87.3
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.2e-19 100.5 63 82.5
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.6e-18 98.2 154 44.8
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.1e-18 97.8 61 83.6
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 8.8e-17 92.4 53 86.8
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 2.6e-16 90.9 377 31.6
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.3e-16 90.5 96 49.0
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 4.4e-16 90.1 184 37.0
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.2e-13 82.0 92 48.9
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-12 79.0 86 46.5
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.5e-08 65.1 47 74.5
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.5e-08 65.1 47 74.5
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 1.7e-07 61.6 177 29.9
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 2.8e-07 60.8 62 66.1
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 1.4e-06 58.5 461 24.7
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 2.4e-06 57.8 117 39.3


User provided reference genes

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