Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 2.3e-241 838.6 456 100.0
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 9.9e-208 726.9 462 81.4
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 2.3e-196 689.1 456 81.8
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 8.7e-196 687.2 455 83.7
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 3.6e-194 681.8 455 82.4
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 9.9e-192 673.7 456 80.9
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.7e-191 672.9 456 80.7
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.9e-190 669.5 456 81.8
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 3.5e-189 665.2 455 78.7
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 8.7e-188 660.6 498 75.7
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 1.1e-187 660.2 459 80.4
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 4.3e-187 658.3 455 79.8
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 5.6e-187 657.9 456 78.5
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.6e-187 657.1 455 74.9
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.1e-186 656.0 455 80.4
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.7e-186 655.2 531 64.4
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 1.4e-185 653.3 456 73.0
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.0e-185 651.7 456 73.0
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 4.5e-184 648.3 456 73.0
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 6.4e-183 644.4 467 73.2
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 8.4e-183 644.0 477 70.2
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.4e-182 643.3 455 80.0
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 4.2e-182 641.7 467 76.9
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 1.5e-179 633.3 529 66.2
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 1.5e-179 633.3 430 80.2
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 1.9e-179 632.9 456 76.3
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.1e-177 627.1 457 69.4
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.1e-177 627.1 467 74.9
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 6.9e-177 624.4 458 69.4
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.5e-176 623.2 485 70.7
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.9e-175 619.0 488 72.5
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 4.9e-175 618.2 485 72.2
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 6.5e-175 617.8 463 74.9
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 4.2e-174 615.1 462 74.9
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 7.1e-174 614.4 501 65.1
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.1e-173 612.8 513 64.9
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 4.6e-173 611.7 462 74.2
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.3e-172 610.1 456 75.4
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 8.7e-172 607.4 456 75.4
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 1.1e-171 607.1 459 74.1
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.5e-171 605.9 478 65.9
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 3.1e-169 599.0 482 71.2
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 5.3e-169 598.2 463 65.4
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 6.9e-169 597.8 468 63.9
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.9e-169 597.8 460 66.7
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 9.0e-169 597.4 464 65.7
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 9.0e-169 597.4 463 74.1
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 2.2e-167 592.8 464 72.6
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 2.9e-167 592.4 484 70.9
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 6.5e-167 591.3 486 64.4
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 8.5e-167 590.9 456 71.7
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 8.5e-167 590.9 505 68.3
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 1.4e-166 590.1 464 65.5
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.9e-166 589.7 486 61.5
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 7.9e-165 584.3 442 68.1
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.3e-164 583.6 482 67.4
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 6.7e-164 581.3 483 60.9
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 6.7e-164 581.3 458 73.8
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 2.5e-163 579.3 464 65.1
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 2.2e-162 576.2 479 69.7
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 6.3e-162 574.7 494 59.9
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 6.3e-162 574.7 494 59.9
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.8e-161 573.2 497 66.8
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 6.9e-161 571.2 501 59.3
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 6.7e-156 554.7 430 63.7
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 2.6e-152 542.7 486 66.7
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 6.5e-151 538.1 488 63.5
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.1e-150 537.3 422 64.0
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.6e-149 533.5 482 58.1
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 4.7e-149 531.9 422 65.2
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.0e-148 530.8 429 64.3
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.4e-148 530.4 560 59.1
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 1.8e-148 530.0 422 64.7
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 3.9e-148 528.9 487 62.8
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 5.2e-148 528.5 423 64.5
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.1e-147 527.3 412 66.0
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 4.4e-147 525.4 551 55.0
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 3.7e-146 522.3 428 61.9
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 1.1e-145 520.8 475 58.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 3.5e-144 515.8 487 65.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 4.5e-144 515.4 542 54.2
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 3.8e-143 512.3 412 71.6
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.5e-142 510.4 457 65.6
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.5e-142 509.6 458 59.2
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 4.2e-142 508.8 457 61.7
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 1.0e-140 504.2 480 55.0
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 5.2e-140 501.9 468 57.5
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 6.7e-140 501.5 429 62.2
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.7e-138 496.9 456 63.2
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 2.2e-138 496.5 430 60.5
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 1.2e-136 490.7 486 52.9
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 1.9e-134 483.4 329 81.8
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.5e-134 483.0 514 51.4
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 7.5e-131 471.5 467 60.4
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 1.7e-130 470.3 435 56.6
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.8e-129 466.8 423 57.9
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 9.1e-129 464.5 412 68.0
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.0e-127 461.1 412 67.5
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 4.7e-125 452.2 588 45.6
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.3e-124 449.9 412 65.5
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 8.9e-124 448.0 423 56.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 4.4e-123 445.7 379 60.7
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.8e-122 443.0 398 61.6
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 3.7e-122 442.6 459 60.1
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.7e-112 409.8 389 59.1
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.1e-110 404.4 461 50.5
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 6.4e-98 362.1 283 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 2.4e-97 360.1 498 47.6
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 4.6e-96 355.9 412 46.6
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.1e-81 308.1 403 43.4
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.1e-79 299.3 208 75.0
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 3.4e-75 286.6 298 51.3
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 6.4e-74 282.3 250 69.2
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 1.1e-70 271.6 248 58.1
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 6.9e-68 262.3 211 65.9
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 8.4e-66 255.4 209 65.6
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 7.1e-65 252.3 471 42.3
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 7.1e-65 252.3 471 42.3
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 8.2e-61 238.8 456 34.0
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.8e-55 221.1 182 64.8
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-49 201.4 109 85.3
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 3.2e-49 200.3 135 72.6
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 5.1e-47 193.0 199 55.3
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 6.7e-47 192.6 245 45.7
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 2.2e-45 187.6 204 51.5
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 1.3e-42 178.3 477 28.3
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 3.9e-39 166.8 149 58.4
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.2e-33 146.7 81 82.7
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 2.6e-30 137.5 81 76.5
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 2.6e-30 137.5 114 65.8
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 4.4e-30 136.7 75 84.0
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 3.1e-28 130.6 110 59.1
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 2.6e-27 127.5 468 25.9
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 5.9e-27 126.3 230 33.0
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 3.6e-24 117.1 67 80.6
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.3e-21 108.6 377 23.6
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 2.5e-17 94.4 84 53.6
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 2.3e-15 87.8 236 32.6
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 1.2e-14 85.5 393 23.9
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 1.2e-14 85.5 393 23.9
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 5.7e-14 83.2 435 21.4
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 1.3e-13 82.0 39 89.7
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 4.8e-13 80.1 376 24.2
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 2.4e-12 77.8 74 58.1
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 3.1e-12 77.4 448 22.8
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 3.1e-12 77.4 448 22.8
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 4.1e-12 77.0 281 25.3
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 7.0e-12 76.3 478 22.4
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 9.1e-12 75.9 410 21.2
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.2e-11 75.5 261 26.1
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 1.2e-11 75.5 53 67.9
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 5.9e-11 73.2 407 21.9
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 5.9e-11 73.2 475 22.7
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 5.9e-11 73.2 373 23.9
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 7.7e-11 72.8 476 22.7
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.7e-10 71.6 326 25.5
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 1.7e-10 71.6 80 43.8
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 2.3e-10 71.2 376 23.4
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 2.9e-10 70.9 329 24.9
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 6.6e-10 69.7 411 22.4
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 8.6e-10 69.3 516 21.5
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 8.6e-10 69.3 471 21.4
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 1.5e-09 68.6 524 21.0
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 1.5e-09 68.6 47 68.1
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.9e-09 68.2 415 22.2
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 9.5e-09 65.9 485 20.6
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 1.2e-08 65.5 475 20.8
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 4.7e-08 63.5 475 21.3
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.4e-07 62.0 482 20.7
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 3.4e-06 57.4 470 20.0


User provided reference genes

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