Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 5.7e-92 340.9 170 100.0
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.9e-48 195.3 164 57.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.8e-45 186.4 119 68.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.5e-44 183.3 128 64.8
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.0e-44 183.0 124 66.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.0e-44 183.0 121 66.1
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.6e-44 182.6 118 69.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.6e-44 182.6 125 65.6
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.4e-44 181.8 134 59.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.8e-44 180.6 166 57.8
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.3e-43 180.3 124 66.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.3e-43 180.3 165 53.3
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.3e-43 180.3 123 68.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.3e-43 180.3 123 65.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.7e-43 179.9 138 60.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.7e-43 179.9 123 62.6
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.7e-43 179.9 123 62.6
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.7e-43 178.7 167 53.9
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.7e-43 178.7 168 51.8
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 6.4e-43 177.9 168 51.8
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 8.3e-43 177.6 124 66.1
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.3e-43 177.6 163 52.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.3e-43 177.6 165 52.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.4e-42 176.8 121 66.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.4e-42 176.8 128 61.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 119 64.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 128 61.7
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.4e-42 176.8 138 58.0
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.9e-42 176.4 123 62.6
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.4e-42 176.0 126 63.5
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 2.4e-42 176.0 193 50.8
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.4e-42 176.0 188 50.5
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.1e-42 175.3 123 63.4
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.4e-42 174.9 141 57.4
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.4e-42 174.9 125 60.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 5.4e-42 174.9 121 63.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 7.0e-42 174.5 119 62.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 9.2e-42 174.1 113 65.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.2e-41 173.7 161 54.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.0e-41 172.9 167 53.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 2.0e-41 172.9 127 62.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.5e-41 172.2 159 50.9
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.5e-41 172.2 159 50.9
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.6e-41 171.8 124 58.9
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.6e-41 171.8 159 51.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 4.6e-41 171.8 120 64.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.6e-41 171.8 117 64.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.0e-41 171.4 139 56.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 6.0e-41 171.4 168 48.8
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.8e-41 171.0 114 64.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.8e-41 171.0 167 49.7
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.0e-40 170.6 121 61.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.0e-40 170.6 162 53.7
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.3e-40 170.2 126 59.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.3e-40 170.2 133 59.4
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.7e-40 169.9 125 59.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.7e-40 169.9 121 61.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.3e-40 169.5 120 60.0
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.0e-40 169.1 119 63.0
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.0e-40 169.1 123 61.0
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 3.0e-40 169.1 121 64.5
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.9e-40 168.7 118 61.9
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 5.0e-40 168.3 121 60.3
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 5.0e-40 168.3 169 52.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 5.0e-40 168.3 178 50.6
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 6.6e-40 167.9 190 50.0
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 8.6e-40 167.5 123 58.5
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 8.6e-40 167.5 122 61.5
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 8.6e-40 167.5 117 60.7
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-39 167.2 120 62.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-39 166.8 167 50.3
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.9e-39 166.4 130 59.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.9e-39 166.4 167 49.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-39 166.0 131 55.7
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.3e-39 165.6 120 61.7
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 7.3e-39 164.5 131 55.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 7.3e-39 164.5 121 60.3
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 7.3e-39 164.5 117 62.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 9.5e-39 164.1 120 60.8
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.2e-38 163.7 128 58.6
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.2e-38 163.7 137 57.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.6e-38 163.3 139 55.4
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.6e-38 163.3 115 61.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.6e-38 163.3 119 59.7
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.8e-38 162.5 119 58.8
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 3.6e-38 162.2 164 49.4
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 3.6e-38 162.2 164 49.4
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.7e-38 161.8 122 57.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 6.2e-38 161.4 124 54.0
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 8.1e-38 161.0 120 60.0
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 8.1e-38 161.0 121 60.3
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.1e-37 160.6 112 63.4
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.1e-37 160.6 180 46.7
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.4e-37 160.2 119 58.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.8e-37 159.8 120 61.7
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.8e-37 159.8 120 61.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.3e-37 159.5 127 57.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 6.8e-37 157.9 125 59.2
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 6.8e-37 157.9 118 61.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.2e-36 157.1 117 59.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.4e-36 155.2 118 57.6
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 4.4e-36 155.2 124 54.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.8e-36 154.8 166 47.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.8e-36 154.8 124 53.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.8e-36 154.8 119 58.0
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 9.8e-36 154.1 124 54.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 9.8e-36 154.1 124 54.8
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.8e-36 154.1 162 47.5
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.7e-35 153.3 119 56.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.2e-35 152.9 124 52.4
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.2e-35 152.9 124 52.4
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.2e-35 152.9 124 52.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 2.2e-35 152.9 159 48.4
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.9e-35 152.5 124 54.0
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.9e-35 152.5 124 54.0
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.9e-35 152.5 124 54.0
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.9e-35 152.5 124 54.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 3.7e-35 152.1 115 58.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.9e-35 151.8 126 51.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.3e-35 151.0 163 44.8
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.3e-35 151.0 113 58.4
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.1e-34 150.6 121 50.4
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.1e-34 150.6 165 50.3
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.4e-34 150.2 126 50.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-34 150.2 163 43.6
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-34 149.4 113 56.6
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.2e-34 149.1 120 55.8
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.2e-34 149.1 113 57.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.4e-34 148.3 117 59.8
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 9.2e-34 147.5 118 55.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.6e-33 146.7 198 42.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-33 146.7 128 52.3
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.0e-33 144.8 123 50.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 6.0e-33 144.8 163 47.2
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.0e-32 144.1 167 47.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 5.1e-32 141.7 117 52.1
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.1e-32 141.7 123 52.0
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 6.6e-32 141.4 114 57.9
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.9e-31 139.8 123 49.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 4.3e-31 138.7 171 44.4
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 7.3e-31 137.9 119 51.3
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-30 136.3 108 55.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.7e-30 135.2 103 56.3
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.3e-29 132.9 108 57.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.0e-29 132.1 112 51.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 5.2e-29 131.7 123 48.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.9e-29 131.0 92 60.9
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 6.4e-27 124.8 177 43.5
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.4e-26 122.9 110 52.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.4e-26 122.9 180 40.0
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 4.1e-26 122.1 177 42.4
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 7.1e-26 121.3 177 42.9
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-25 120.2 145 46.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-25 120.2 122 48.4
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.6e-24 114.4 107 52.3
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 2.5e-23 112.8 100 51.0
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.3e-23 111.3 96 53.1
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 9.6e-23 110.9 108 53.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.6e-22 109.0 93 52.7
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-21 105.9 83 51.8
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.2e-21 105.1 121 40.5
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.6e-17 92.0 75 54.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 7.8e-17 91.3 167 36.5
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.6e-16 88.2 67 52.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.9e-15 86.7 119 43.7
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 4.8e-14 82.0 64 54.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.1e-14 81.3 90 42.2
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.2e-10 69.3 61 52.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 5.4e-10 68.6 164 36.6
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.1e-08 62.0 42 59.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-07 60.1 71 40.8
Gohir.D10G229700 Gossypium hirsutum HOM05D004187 ORTHO05D217358 7.4e-07 58.2 49 44.9
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 6.2e-06 55.1 73 42.5


User provided reference genes

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